[med-svn] [vcftools] 01/07: Missing manpage

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository vcftools.

commit 7a7d1fdc7071da77561582be2318b7669975828b
Author: Andreas Tille <tille at debian.org>
Date:   Sun Jul 3 22:34:25 2016 +0200

    Missing manpage
---
 debian/makeman                 | 26 ++++++++++++++------------
 debian/mans/vcf-fix-newlines.1 | 23 +++++++++++++++++++++++
 2 files changed, 37 insertions(+), 12 deletions(-)

diff --git a/debian/makeman b/debian/makeman
index aff8722..7f973c8 100755
--- a/debian/makeman
+++ b/debian/makeman
@@ -2,17 +2,19 @@
 # helper script to create first version of man pages
 
 MANDIR=mans
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
 
-help2man -n "annotate VCF file, add filters or custom annotations" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-annotate > ${MANDIR}/vcf-annotate.1
-help2man -n "compare bgzipped and tabix indexed VCF files" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-compare > ${MANDIR}/vcf-compare.1
-help2man -n "concatenate VCF files" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-concat > ${MANDIR}/vcf-concat.1
-help2man -n "convert between VCF versions" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-convert > ${MANDIR}/vcf-convert.1
-help2man -n "create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-isec > ${MANDIR}/vcf-isec.1
-help2man -n "merge the bgzipped and tabix indexed VCF files" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-merge > ${MANDIR}/vcf-merge.1
-help2man -n "query VCF files" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-query > ${MANDIR}/vcf-query.1
-help2man -n "sort VCF file" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-sort > ${MANDIR}/vcf-sort.1
-help2man -n "statistic of VCF file" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-stats > ${MANDIR}/vcf-stats.1
-help2man -n "create subset of VCF file" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-subset > ${MANDIR}/vcf-subset.1
-help2man -n "convert to tabix" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-to-tab > ${MANDIR}/vcf-to-tab.1
-help2man -n "validate VCF file" -N --help-option="-h" --no-discard-stderr  --version-string="0.1.5" vcf-validator > ${MANDIR}/vcf-validator.1
+help2man -n "annotate VCF file, add filters or custom annotations" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-annotate > ${MANDIR}/vcf-annotate.1
+help2man -n "compare bgzipped and tabix indexed VCF files" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-compare > ${MANDIR}/vcf-compare.1
+help2man -n "concatenate VCF files" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-concat > ${MANDIR}/vcf-concat.1
+help2man -n "convert between VCF versions" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-convert > ${MANDIR}/vcf-convert.1
+help2man -n "create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-isec > ${MANDIR}/vcf-isec.1
+help2man -n "merge the bgzipped and tabix indexed VCF files" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-merge > ${MANDIR}/vcf-merge.1
+help2man -n "query VCF files" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-query > ${MANDIR}/vcf-query.1
+help2man -n "sort VCF file" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-sort > ${MANDIR}/vcf-sort.1
+help2man -n "statistic of VCF file" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-stats > ${MANDIR}/vcf-stats.1
+help2man -n "create subset of VCF file" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-subset > ${MANDIR}/vcf-subset.1
+help2man -n "convert to tabix" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-to-tab > ${MANDIR}/vcf-to-tab.1
+help2man -n "validate VCF file" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-validator > ${MANDIR}/vcf-validator.1
+help2man -n "fix newlines in VCF file" -N --help-option="-h" --no-discard-stderr  --version-string="${VERSION}" vcf-fix-newlines > ${MANDIR}/vcf-fix-newlines.1
 
diff --git a/debian/mans/vcf-fix-newlines.1 b/debian/mans/vcf-fix-newlines.1
new file mode 100644
index 0000000..20ae37e
--- /dev/null
+++ b/debian/mans/vcf-fix-newlines.1
@@ -0,0 +1,23 @@
+.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
+.TH VCF-FIX-NEWLINES "1" "July 2016" "vcf-fix-newlines 0.1.14" "User Commands"
+.SH NAME
+vcf-fix-newlines \- fix newlines in VCF file
+.SH SYNOPSIS
+.B vcf-fix-newlines
+[\fI\,OPTIONS\/\fR]
+.SH DESCRIPTION
+About: Reads in a VCF file with any (commonly used) newline representation and outputs with the
+.IP
+current system's newline representation.
+.SH OPTIONS
+.TP
+\fB\-i\fR, \fB\-\-info\fR
+Report if the file is consistent with the current platform based.
+.TP
+\fB\-h\fR, \-?, \fB\-\-help\fR
+This help message.
+.SS "Example:"
+.IP
+vcf\-fix\-newlines \fB\-i\fR file.vcf
+vcf\-fix\-newlines file.vcf.gz > out.vcf
+cat file.vcf | vcf\-fix\-newlines > out.vcf

-- 
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