[med-svn] [cwltool] branch master updated (70cecb4 -> bb3afac)
Andreas Tille
tille at debian.org
Sun Dec 18 07:35:12 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository cwltool.
from 70cecb4 new upstream release
new 852d4a4 Add missing Build-Depends: python-keepalive
adds 9bbeaa5 Imported Upstream version 1.0.20160504183010
new d2d28ba New upstream version 1.0.20161207161158
new 5d53951 Updated version 1.0.20161207161158 from 'upstream/1.0.20161207161158'
new 8adaa79 Verified watch file by fetching new upstream version
new 1b80aba debhelper 10
new b5b32a2 Add close bug statement
new 1d4a2b1 Adapt patch
new 1e794eb Add python-typing as Build-Depends and comment patch to skip it
new 59a9daf Do not try to create manpage for removed tool cwltest, Remove empty template for upstream metadata
new bb3afac Try to ignore cwltest
The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
MANIFEST.in | 2 +-
Makefile | 161 ++++
PKG-INFO | 44 +-
README.rst | 38 +-
cwltool.egg-info/PKG-INFO | 44 +-
cwltool.egg-info/SOURCES.txt | 74 +-
cwltool.egg-info/entry_points.txt | 1 -
cwltool.egg-info/pbr.json | 1 +
cwltool.egg-info/requires.txt | 13 +-
cwltool/builder.py | 126 +--
cwltool/cwlNodeEngine.js | 13 +
cwltool/cwlrdf.py | 60 +-
cwltool/cwltest.py | 210 -----
cwltool/docker.py | 30 +-
cwltool/docker_uid.py | 16 +-
cwltool/draft2tool.py | 449 ++++++-----
cwltool/errors.py | 3 +
cwltool/expression.py | 240 +++---
cwltool/factory.py | 21 +-
cwltool/job.py | 365 ++++++---
cwltool/load_tool.py | 250 ++++++
cwltool/main.py | 811 ++++++++++---------
cwltool/pack.py | 82 ++
cwltool/pathmapper.py | 264 +++++--
cwltool/process.py | 505 +++++++++---
cwltool/resolver.py | 30 +
cwltool/sandboxjs.py | 197 ++---
.../{cwl-avro.yml => CommonWorkflowLanguage.yml} | 457 ++++++-----
cwltool/schemas/draft-3/Process.yml | 20 +-
cwltool/schemas/draft-3/README.md | 5 +-
cwltool/schemas/draft-3/UserGuide.yml | 859 ++++++++++++++++++++
cwltool/schemas/draft-3/Workflow.yml | 4 +-
.../salad/schema_salad/metaschema/metaschema.yml | 4 +-
cwltool/schemas/draft-3/userguide-intro.md | 21 +-
.../CommandLineTool-standalone.yml | 0
.../schemas/{draft-3 => v1.0}/CommandLineTool.yml | 661 +++++++++++-----
.../{draft-3 => v1.0}/CommonWorkflowLanguage.yml | 0
cwltool/schemas/v1.0/Process.yml | 743 ++++++++++++++++++
cwltool/schemas/{draft-3 => v1.0}/README.md | 4 +-
cwltool/schemas/v1.0/UserGuide.yml | 869 +++++++++++++++++++++
cwltool/schemas/{draft-3 => v1.0}/Workflow.yml | 313 +++++---
cwltool/schemas/{draft-3 => v1.0}/concepts.md | 138 ++--
cwltool/schemas/{draft-3 => v1.0}/contrib.md | 8 +-
cwltool/schemas/{draft-3 => v1.0}/intro.md | 4 +-
cwltool/schemas/{draft-3 => v1.0}/invocation.md | 20 +-
.../salad/schema_salad/metaschema/field_name.yml | 0
.../schema_salad/metaschema/field_name_proc.yml | 0
.../schema_salad/metaschema/field_name_schema.yml | 0
.../schema_salad/metaschema/field_name_src.yml | 0
.../salad/schema_salad/metaschema/ident_res.yml | 0
.../schema_salad/metaschema/ident_res_proc.yml | 0
.../schema_salad/metaschema/ident_res_schema.yml | 0
.../schema_salad/metaschema/ident_res_src.yml | 0
.../schema_salad/metaschema/import_include.md | 64 ++
.../salad/schema_salad/metaschema/link_res.yml | 0
.../schema_salad/metaschema/link_res_proc.yml | 0
.../schema_salad/metaschema/link_res_schema.yml | 0
.../salad/schema_salad/metaschema/link_res_src.yml | 0
.../salad/schema_salad/metaschema/metaschema.yml | 270 ++-----
.../schema_salad/metaschema/metaschema_base.yml | 164 ++++
.../salad/schema_salad/metaschema/salad.md | 0
.../salad/schema_salad/metaschema/vocab_res.yml | 0
.../schema_salad/metaschema/vocab_res_proc.yml | 0
.../schema_salad/metaschema/vocab_res_schema.yml | 0
.../schema_salad/metaschema/vocab_res_src.yml | 0
cwltool/schemas/v1.0/userguide-intro.md | 28 +
.../CommandLineTool-standalone.yml | 0
.../{draft-3 => v1.1.0-dev1}/CommandLineTool.yml | 715 ++++++++++++-----
.../CommonWorkflowLanguage.yml | 0
cwltool/schemas/v1.1.0-dev1/Process.yml | 749 ++++++++++++++++++
cwltool/schemas/{draft-3 => v1.1.0-dev1}/README.md | 4 +-
cwltool/schemas/v1.1.0-dev1/UserGuide.yml | 869 +++++++++++++++++++++
.../schemas/{draft-3 => v1.1.0-dev1}/Workflow.yml | 328 +++++---
.../schemas/{draft-3 => v1.1.0-dev1}/concepts.md | 143 ++--
.../schemas/{draft-3 => v1.1.0-dev1}/contrib.md | 8 +-
cwltool/schemas/{draft-3 => v1.1.0-dev1}/intro.md | 4 +-
.../schemas/{draft-3 => v1.1.0-dev1}/invocation.md | 20 +-
.../salad/schema_salad/metaschema/field_name.yml | 0
.../schema_salad/metaschema/field_name_proc.yml | 0
.../schema_salad/metaschema/field_name_schema.yml | 0
.../schema_salad/metaschema/field_name_src.yml | 0
.../salad/schema_salad/metaschema/ident_res.yml | 0
.../schema_salad/metaschema/ident_res_proc.yml | 0
.../schema_salad/metaschema/ident_res_schema.yml | 0
.../schema_salad/metaschema/ident_res_src.yml | 0
.../schema_salad/metaschema/import_include.md | 64 ++
.../salad/schema_salad/metaschema/link_res.yml | 0
.../schema_salad/metaschema/link_res_proc.yml | 0
.../schema_salad/metaschema/link_res_schema.yml | 0
.../salad/schema_salad/metaschema/link_res_src.yml | 0
.../salad/schema_salad/metaschema/metaschema.yml | 270 ++-----
.../schema_salad/metaschema/metaschema_base.yml | 164 ++++
.../salad/schema_salad/metaschema/salad.md | 0
.../salad/schema_salad/metaschema/vocab_res.yml | 0
.../schema_salad/metaschema/vocab_res_proc.yml | 0
.../schema_salad/metaschema/vocab_res_schema.yml | 0
.../schema_salad/metaschema/vocab_res_src.yml | 0
cwltool/schemas/v1.1.0-dev1/userguide-intro.md | 28 +
cwltool/stdfsaccess.py | 30 +-
cwltool/update.py | 291 +++++--
cwltool/utils.py | 2 +-
cwltool/workflow.py | 413 +++++-----
debian/changelog | 16 +-
debian/compat | 2 +-
debian/control | 4 +-
debian/manpages | 1 -
debian/patches/ignore_cwltest.patch | 18 +
debian/patches/no-typing | 29 +-
debian/patches/series | 3 +-
debian/rules | 6 +-
debian/upstream/metadata | 12 -
debian/watch | 2 +-
ez_setup.py | 259 +++---
setup.cfg | 5 +-
setup.py | 37 +-
115 files changed, 9997 insertions(+), 3205 deletions(-)
create mode 100644 Makefile
create mode 100644 cwltool.egg-info/pbr.json
create mode 100755 cwltool/cwlNodeEngine.js
delete mode 100755 cwltool/cwltest.py
create mode 100644 cwltool/load_tool.py
create mode 100644 cwltool/pack.py
create mode 100644 cwltool/resolver.py
copy cwltool/schemas/draft-2/{cwl-avro.yml => CommonWorkflowLanguage.yml} (90%)
copy cwltool/schemas/{draft-3 => v1.0}/CommandLineTool-standalone.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/CommandLineTool.yml (52%)
copy cwltool/schemas/{draft-3 => v1.0}/CommonWorkflowLanguage.yml (100%)
create mode 100644 cwltool/schemas/v1.0/Process.yml
copy cwltool/schemas/{draft-3 => v1.0}/README.md (92%)
create mode 100644 cwltool/schemas/v1.0/UserGuide.yml
copy cwltool/schemas/{draft-3 => v1.0}/Workflow.yml (67%)
copy cwltool/schemas/{draft-3 => v1.0}/concepts.md (79%)
copy cwltool/schemas/{draft-3 => v1.0}/contrib.md (70%)
copy cwltool/schemas/{draft-3 => v1.0}/intro.md (88%)
copy cwltool/schemas/{draft-3 => v1.0}/invocation.md (91%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/field_name.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/field_name_proc.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/field_name_schema.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/field_name_src.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/ident_res.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/ident_res_proc.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/ident_res_schema.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/ident_res_src.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/import_include.md (63%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/link_res.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/link_res_proc.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/link_res_schema.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/link_res_src.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/metaschema.yml (60%)
create mode 100644 cwltool/schemas/v1.0/salad/schema_salad/metaschema/metaschema_base.yml
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/salad.md (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/vocab_res.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/vocab_res_proc.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/vocab_res_schema.yml (100%)
copy cwltool/schemas/{draft-3 => v1.0}/salad/schema_salad/metaschema/vocab_res_src.yml (100%)
create mode 100644 cwltool/schemas/v1.0/userguide-intro.md
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/CommandLineTool-standalone.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/CommandLineTool.yml (50%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/CommonWorkflowLanguage.yml (100%)
create mode 100644 cwltool/schemas/v1.1.0-dev1/Process.yml
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/README.md (92%)
create mode 100644 cwltool/schemas/v1.1.0-dev1/UserGuide.yml
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/Workflow.yml (66%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/concepts.md (78%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/contrib.md (70%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/intro.md (88%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/invocation.md (91%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/field_name.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/field_name_proc.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/field_name_schema.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/field_name_src.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/ident_res.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/ident_res_proc.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/ident_res_schema.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/ident_res_src.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/import_include.md (63%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/link_res.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/link_res_proc.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/link_res_schema.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/link_res_src.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/metaschema.yml (60%)
create mode 100644 cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/metaschema_base.yml
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/salad.md (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/vocab_res.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/vocab_res_proc.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/vocab_res_schema.yml (100%)
copy cwltool/schemas/{draft-3 => v1.1.0-dev1}/salad/schema_salad/metaschema/vocab_res_src.yml (100%)
create mode 100644 cwltool/schemas/v1.1.0-dev1/userguide-intro.md
create mode 100644 debian/patches/ignore_cwltest.patch
delete mode 100644 debian/upstream/metadata
mode change 100644 => 100755 ez_setup.py
mode change 100644 => 100755 setup.py
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