[med-svn] [kineticstools] branch master updated (980bfc1 -> c5ebe7e)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch master
in repository kineticstools.

      from  980bfc1   releasing package kineticstools version 0.5.2+dfsg-2
       new  9b27a33   Imported Upstream version 0.6.0+dfsg
       new  d58a0dd   Merge tag 'upstream/0.6.0+dfsg'
       new  9637706   Drop patch applied upstream
       new  737e596   Imported Upstream version 0.6.1+dfsg
       new  c5ebe7e   Merge tag 'upstream/0.6.1+dfsg'

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
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Summary of changes:
 README.md                                    |   3 +-
 bin/__init__.py                              |  29 ---
 circle.yml                                   |   3 +-
 debian/patches/remove-spurious-package.patch |  36 ----
 debian/patches/series                        |   1 -
 doc/manual.rst                               | 116 ++++++-----
 kineticsTools/ReferenceUtils.py              |  14 +-
 kineticsTools/ResultWriter.py                | 278 +++++++++++++++++----------
 kineticsTools/ipdSummary.py                  | 104 ++++++----
 kineticsTools/summarizeModifications.py      |   4 +-
 kineticsTools/tasks/__init__.py              |   0
 kineticsTools/tasks/gather_kinetics_h5.py    | 174 +++++++++++++++++
 requirements-ci.txt                          |   3 +-
 requirements-dev.txt                         |   1 -
 setup.py                                     |   6 +-
 test/cram/extra/bigwig.t                     |  15 ++
 test/cram/version.t                          |  21 +-
 test/test_gather_h5.py                       | 105 ++++++++++
 test/test_outputs.py                         | 106 ++++++++++
 test/test_tool_contract.py                   |  34 ++--
 20 files changed, 747 insertions(+), 306 deletions(-)
 delete mode 100755 bin/__init__.py
 delete mode 100644 debian/patches/remove-spurious-package.patch
 create mode 100644 kineticsTools/tasks/__init__.py
 create mode 100644 kineticsTools/tasks/gather_kinetics_h5.py
 create mode 100644 test/cram/extra/bigwig.t
 create mode 100644 test/test_gather_h5.py
 create mode 100644 test/test_outputs.py

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