[med-svn] [kineticstools] 02/05: Merge tag 'upstream/0.6.0+dfsg'

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository kineticstools.

commit d58a0ddfff173c86bd7226dd5985ff9eecf078bd
Merge: 980bfc1 9b27a33
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Mon Aug 22 23:17:21 2016 -0700

    Merge tag 'upstream/0.6.0+dfsg'
    
    Upstream version 0.6.0+dfsg

 README.md                                 |   3 +-
 bin/__init__.py                           |  29 ----
 circle.yml                                |   3 +-
 kineticsTools/ReferenceUtils.py           |  11 +-
 kineticsTools/ResultWriter.py             | 241 ++++++++++++++++++++----------
 kineticsTools/ipdSummary.py               |  91 ++++++-----
 kineticsTools/summarizeModifications.py   |   2 +-
 kineticsTools/tasks/__init__.py           |   0
 kineticsTools/tasks/gather_kinetics_h5.py | 172 +++++++++++++++++++++
 requirements-ci.txt                       |   3 +-
 requirements-dev.txt                      |   1 -
 setup.py                                  |   6 +-
 test/cram/extra/bigwig.t                  |  15 ++
 test/cram/version.t                       |  19 +--
 test/test_gather_h5.py                    |  77 ++++++++++
 test/test_outputs.py                      | 105 +++++++++++++
 test/test_tool_contract.py                |  28 ++--
 17 files changed, 624 insertions(+), 182 deletions(-)

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