[med-svn] [kineticstools] branch upstream updated (5ef124e -> 737e596)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch upstream
in repository kineticstools.

      from  5ef124e   Imported Upstream version 0.5.2+dfsg
       new  9b27a33   Imported Upstream version 0.6.0+dfsg
       new  737e596   Imported Upstream version 0.6.1+dfsg

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                                 |   3 +-
 bin/__init__.py                           |  29 ----
 circle.yml                                |   3 +-
 doc/manual.rst                            | 116 ++++++-------
 kineticsTools/ReferenceUtils.py           |  14 +-
 kineticsTools/ResultWriter.py             | 278 +++++++++++++++++++-----------
 kineticsTools/ipdSummary.py               | 104 ++++++-----
 kineticsTools/summarizeModifications.py   |   4 +-
 kineticsTools/tasks/__init__.py           |   0
 kineticsTools/tasks/gather_kinetics_h5.py | 174 +++++++++++++++++++
 requirements-ci.txt                       |   3 +-
 requirements-dev.txt                      |   1 -
 setup.py                                  |   6 +-
 test/cram/extra/bigwig.t                  |  15 ++
 test/cram/version.t                       |  21 +--
 test/test_gather_h5.py                    | 105 +++++++++++
 test/test_outputs.py                      | 106 ++++++++++++
 test/test_tool_contract.py                |  34 ++--
 18 files changed, 747 insertions(+), 269 deletions(-)
 delete mode 100755 bin/__init__.py
 create mode 100644 kineticsTools/tasks/__init__.py
 create mode 100644 kineticsTools/tasks/gather_kinetics_h5.py
 create mode 100644 test/cram/extra/bigwig.t
 create mode 100644 test/test_gather_h5.py
 create mode 100644 test/test_outputs.py

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/kineticstools.git