[med-svn] [picard-tools] 02/03: Fix parameter type for one test

[Vincent Danjean]

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vdanjean pushed a commit to branch master
in repository picard-tools.

commit 069dca85851a261d33053dde558fa08f3974aef3
Author: Vincent Danjean <vdanjean at debian.org>
Date:   Sun Dec 18 18:49:15 2016 +0100

    Fix parameter type for one test
---
 debian/changelog                               | 1 +
 debian/patches/30-tests-fix-dataprovider.patch | 8 ++++----
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index e48b6ff..025bcf1 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -8,6 +8,7 @@ picard-tools (2.8.0+dfsg-1) UNRELEASED; urgency=medium
 
   [ Vincent Danjean ]
   * Really force C locale for tests
+  * Fix parameter type for one test
 
  -- Andreas Tille <tille at debian.org>  Sun, 11 Dec 2016 08:52:38 +0100
 
diff --git a/debian/patches/30-tests-fix-dataprovider.patch b/debian/patches/30-tests-fix-dataprovider.patch
index d9100ae..f81a76c 100644
--- a/debian/patches/30-tests-fix-dataprovider.patch
+++ b/debian/patches/30-tests-fix-dataprovider.patch
@@ -2,7 +2,7 @@ Description: fix data provider requirements
 Author: Sascha Steinbiss <satta at debian.org>
 --- a/src/test/java/picard/analysis/directed/CollectHsMetricsTest.java
 +++ b/src/test/java/picard/analysis/directed/CollectHsMetricsTest.java
-@@ -21,22 +21,22 @@ public class CollectHsMetricsTest extend
+@@ -21,22 +21,22 @@
  
      @DataProvider(name = "collectHsMetricsDataProvider")
      public Object[][] targetedIntervalDataProvider() {
@@ -20,13 +20,13 @@ Author: Sascha Steinbiss <satta at debian.org>
 +                {TEST_DIR.getAbsolutePath() + "/lowbaseq.sam",    intervals, 1, 10, true,  2, 200, 0.5, 0.0, 0.50, 0.0,   1000},
                  // test that read 2 (with mapping quality 1) is filtered out with minimum mapping quality 2
 -                {TEST_DIR + "/lowmapq.sam",     intervals, 2, 0, true,  2, 202, 0,   0.0, 0.505, 0.0,   1000},
-+                {TEST_DIR.getAbsolutePath() + "/lowmapq.sam",     intervals, 2, 0, true,  2, 202, 0,   0.0, 0.505, 0.0,   1000},
++                {TEST_DIR.getAbsolutePath() + "/lowmapq.sam",     intervals, 2, 0, true,  2, 202, 0.0, 0.0, 0.505, 0.0,   1000},
                  // test that we clip overlapping bases
 -                {TEST_DIR + "/overlapping.sam", intervals, 0, 0, true,  2, 202, 0,   0.5, 0.505, 0.505, 1000},
-+                {TEST_DIR.getAbsolutePath() + "/overlapping.sam", intervals, 0, 0, true,  2, 202, 0,   0.5, 0.505, 0.505, 1000},
++                {TEST_DIR.getAbsolutePath() + "/overlapping.sam", intervals, 0, 0, true,  2, 202, 0.0, 0.5, 0.505, 0.505, 1000},
                  // test that we do not clip overlapping bases
 -                {TEST_DIR + "/overlapping.sam", intervals, 0, 0, false, 2, 202, 0,   0.0, 0.505, 0.505, 1000},
-+                {TEST_DIR.getAbsolutePath() + "/overlapping.sam", intervals, 0, 0, false, 2, 202, 0,   0.0, 0.505, 0.505, 1000},
++                {TEST_DIR.getAbsolutePath() + "/overlapping.sam", intervals, 0, 0, false, 2, 202, 0.0, 0.0, 0.505, 0.505, 1000},
                  // A read 10 base pairs long. two intervals: one maps identically to the read, other does not overlap at all
 -                {TEST_DIR + "/single-short-read.sam", twoSmallIntervals, 20, 20, true, 1, 10, 0.0, 0.0, 0.5, 0.0, 1000 }
 +                {TEST_DIR.getAbsolutePath() + "/single-short-read.sam", twoSmallIntervals, 20, 20, true, 1, 10, 0.0, 0.0, 0.5, 0.0, 1000 }

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