[med-svn] [pbseqlib] 02/04: Merge tag 'upstream/0_20161219'

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository pbseqlib.

commit 8935d3a8879772ffcd1add5b0fee29ed0de3f468
Merge: 17f27f2 849e1e0
Author: Afif Elghraoui <afif at debian.org>
Date:   Mon Dec 19 23:47:03 2016 -0800

    Merge tag 'upstream/0_20161219'
    
    Upstream version 0~20161219

 .../algorithms/sorting/LightweightSuffixArray.cpp  | 10 ++--
 alignment/files/ReaderAgglomerate.cpp              |  8 ++--
 alignment/files/ReaderAgglomerate.hpp              |  7 ++-
 alignment/format/BAMPrinter.hpp                    |  2 +-
 alignment/format/BAMPrinterImpl.hpp                |  2 +-
 alignment/format/SAMHeaderPrinter.cpp              | 56 +++++++++-------------
 hdf/HDFZMWWriter.cpp                               |  4 +-
 pbdata/SMRTSequence.cpp                            |  4 +-
 8 files changed, 41 insertions(+), 52 deletions(-)

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