[med-svn] [pbseqlib] branch upstream updated (f3fb1c8 -> 849e1e0)

[Afif Elghraoui]

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afif pushed a change to branch upstream
in repository pbseqlib.

      from  f3fb1c8   Imported Upstream version 0~20160705
       new  849e1e0   Imported Upstream version 0~20161219

The 1 revisions listed above as "new" are entirely new to this
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Summary of changes:
 .../algorithms/sorting/LightweightSuffixArray.cpp  | 10 ++--
 alignment/files/ReaderAgglomerate.cpp              |  8 ++--
 alignment/files/ReaderAgglomerate.hpp              |  7 ++-
 alignment/format/BAMPrinter.hpp                    |  2 +-
 alignment/format/BAMPrinterImpl.hpp                |  2 +-
 alignment/format/SAMHeaderPrinter.cpp              | 56 +++++++++-------------
 hdf/HDFZMWWriter.cpp                               |  4 +-
 pbdata/SMRTSequence.cpp                            |  4 +-
 8 files changed, 41 insertions(+), 52 deletions(-)

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