[med-svn] [blasr] 02/05: Build with pbbam

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository blasr.

commit 456172a461ea2188a5df9b1b9ed9b08f757522e9
Author: Afif Elghraoui <afif at debian.org>
Date:   Tue Oct 25 00:49:01 2016 -0700

    Build with pbbam
    
    This enhances the functionality of blasr (enabling the --sam option)
    and is required now that pbseqlib has been built with pbbam enabled.
    
    Closes: #848751, #848541
---
 debian/TODO    | 2 --
 debian/control | 6 ++++--
 debian/rules   | 2 +-
 3 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/debian/TODO b/debian/TODO
index 7c4d906..04d3e21 100644
--- a/debian/TODO
+++ b/debian/TODO
@@ -3,5 +3,3 @@
 * Update manpages
 
 * build bax2bam and bam2bax
-
-* Look into building with pbbam
diff --git a/debian/control b/debian/control
index 902cf8d..3aa10bd 100644
--- a/debian/control
+++ b/debian/control
@@ -8,7 +8,8 @@ Build-Depends:
 	python,
 	libhdf5-dev,
 	zlib1g-dev,
-	libpbseq-dev,
+	libpbseq-dev (>= 0~20160912),
+	libpbbam-dev,
 Standards-Version: 3.9.8
 Homepage: https://github.com/PacificBiosciences/blasr
 Vcs-Git: https://anonscm.debian.org/git/debian-med/blasr.git
@@ -19,7 +20,8 @@ Architecture: any
 Depends:
 	${shlibs:Depends},
 	${misc:Depends},
-	libpbseq,
+	libpbseq (>= 0~20160912),
+	libpbbam,
 Description: mapping single-molecule sequencing reads
  Basic local alignment with successive refinement (BLASR) is a method
  for mapping single-molecule sequencing reads against a reference genome.
diff --git a/debian/rules b/debian/rules
index e3961ee..eb33f93 100755
--- a/debian/rules
+++ b/debian/rules
@@ -15,7 +15,7 @@ export LIBPBIHDF_INC=$(PBSEQ_BASE)/hdf
 	dh $@ --parallel
 
 override_dh_auto_configure:
-	./configure.py --no-pbbam --shared
+	./configure.py --shared
 
 # Tests require data not available in the source distribution
 override_dh_auto_test: ;

-- 
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