[med-svn] r23341 - in trunk/packages/metastudent-data/trunk/debian: . patches

[Tatiana Malygina]

Author: latticetower-guest
Date: 2016-12-20 17:04:03 +0000 (Tue, 20 Dec 2016)
New Revision: 23341

Added:
   trunk/packages/metastudent-data/trunk/debian/patches/
   trunk/packages/metastudent-data/trunk/debian/patches/01_formatdb_fix_prot_dbtype.patch
   trunk/packages/metastudent-data/trunk/debian/patches/series
Modified:
   trunk/packages/metastudent-data/trunk/debian/changelog
Log:
Follow hints of Aaron M. Ucko - provide type of input file for formatdb (closes: #848394).

Modified: trunk/packages/metastudent-data/trunk/debian/changelog
===================================================================
--- trunk/packages/metastudent-data/trunk/debian/changelog	2016-12-20 16:00:58 UTC (rev 23340)
+++ trunk/packages/metastudent-data/trunk/debian/changelog	2016-12-20 17:04:03 UTC (rev 23341)
@@ -1,11 +1,16 @@
 metastudent-data (2.0.1-2) UNRELEASED; urgency=medium
 
+  [ Andreas Tille ]
   * Team upload.
   * cme fix dpkg-control
   * Follow hint of Aaron M. Ucko regarding blast2 Build-Depends
   * debhelper 10
   * d/rules: remove redundant xz compression enforcement
 
+  [ Tatiana Malygina ]
+  * Follow hints of Aaron M. Ucko - provide type of input file for formatdb
+    (closes: #848394).
+
  -- Andreas Tille <tille at debian.org>  Mon, 19 Dec 2016 14:24:45 +0100
 
 metastudent-data (2.0.1-1) unstable; urgency=medium

Added: trunk/packages/metastudent-data/trunk/debian/patches/01_formatdb_fix_prot_dbtype.patch
===================================================================
--- trunk/packages/metastudent-data/trunk/debian/patches/01_formatdb_fix_prot_dbtype.patch	                        (rev 0)
+++ trunk/packages/metastudent-data/trunk/debian/patches/01_formatdb_fix_prot_dbtype.patch	2016-12-20 17:04:03 UTC (rev 23341)
@@ -0,0 +1,17 @@
+Author: Tatiana Malygina <merlettaia at gmail.com>
+Last-Update: 2016-12-20
+Description: provide type of input file for formatdb. In specific versions of 
+  blast2/ncbi-blast+ there is no default value for this parameter, which leads
+  to Bug#848394. This patch provides correct value and fixes it.
+
+--- a/Makefile.am
++++ b/Makefile.am
+@@ -21,7 +21,7 @@
+ # BLAST databases are architecture dependent and have to be installed in pkgdatadir
+ $(BLASTDB) : %.fasta.psq : $(srcdir)/%.fasta
+ 	mkdir -p $(dir $@) && \
+-		formatdb -i "$<" -n "$(@:.psq=)" && rm -f formatdb.log
++		formatdb -p T -i "$<" -n "$(@:.psq=)" && rm -f formatdb.log
+ 
+ dist-hook:
+ 	find "$(distdir)" -name .svn -o -name '*.phr' -o -name '*.pin' -o -name '*.psq' | xargs rm -rf --

Added: trunk/packages/metastudent-data/trunk/debian/patches/series
===================================================================
--- trunk/packages/metastudent-data/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/metastudent-data/trunk/debian/patches/series	2016-12-20 17:04:03 UTC (rev 23341)
@@ -0,0 +1 @@
+01_formatdb_fix_prot_dbtype.patch