[med-svn] [pbdagcon] 06/12: Build with pbbam

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository pbdagcon.

commit 6cb4709d652fc5296f66b44e288ede7fd31f03d1
Author: Afif Elghraoui <afif at debian.org>
Date:   Tue Dec 20 22:12:23 2016 -0800

    Build with pbbam
    
    Closes: #848755
---
 debian/control | 4 ++++
 debian/rules   | 3 ++-
 2 files changed, 6 insertions(+), 1 deletion(-)

diff --git a/debian/control b/debian/control
index 79bd525..5850e74 100644
--- a/debian/control
+++ b/debian/control
@@ -7,11 +7,14 @@ Uploaders:
 Build-Depends:
 	debhelper (>= 9),
 	python,
+	zlib1g-dev,
+	libhdf5-dev,
 	libboost-dev,
 	libtclap-dev,
 	libpbdata-dev,
 	libblasr-dev,
 	libpbihdf-dev,
+	libpbbam-dev,
 # Test-Depends:
 	libgtest-dev,
 Standards-Version: 3.9.8
@@ -26,6 +29,7 @@ Depends:
 	${misc:Depends},
 	libpbdata,
 	libblasr,
+	libpbbam,
 Suggests:
 	blasr,
 Description: sequence consensus using directed acyclic graphs
diff --git a/debian/rules b/debian/rules
index e06ec6e..5d4f513 100755
--- a/debian/rules
+++ b/debian/rules
@@ -9,6 +9,7 @@ PBSEQ_BASE=/usr/include/pbseq
 export LIBBLASR_INC=$(PBSEQ_BASE)/alignment
 export LIBPBDATA_INC=$(PBSEQ_BASE)/pbdata
 export LIBPBIHDF_INC=$(PBSEQ_BASE)/hdf
+export HDF5_LIB = /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial
 
 export DEB_CPPFLAGS_MAINT_APPEND = -I$(LIBBLASR_INC) -I$(LIBPBDATA_INC) -I$(LIBPBIHDF_INC)
 
@@ -16,7 +17,7 @@ export DEB_CPPFLAGS_MAINT_APPEND = -I$(LIBBLASR_INC) -I$(LIBPBDATA_INC) -I$(LIBP
 	dh $@ --parallel
 
 override_dh_auto_configure:
-	./configure.py --no-pbbam --shared
+	./configure.py --shared
 
 override_dh_auto_test:
 	src/cpp/pbdagcon --help

-- 
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