[med-svn] [clustalo] branch master updated (2732689 -> ab714fe)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository clustalo.

      from  2732689   Close bugs and upload to unstable
       new  417cc01   New upstream version
       new  e110e70   New upstream version 1.2.4
       new  9f85601   Merge tag 'upstream/1.2.4'
       new  63324d1   Upstream has applied patches
       new  00d8acf   debhelper 10
       new  ab714fe   UPload to unstable

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ChangeLog                       |   6 +
 Doxyfile                        |   2 +-
 INSTALL                         | 118 +--------
 configure                       |  20 +-
 configure.ac                    |   7 +-
 debian/changelog                |   8 +
 debian/compat                   |   2 +-
 debian/control                  |   2 +-
 debian/patches/log2.patch       |  33 ---
 debian/patches/series           |   1 -
 debian/watch                    |   3 +-
 depcomp                         | 531 ++++++++++++++++++++++++++--------------
 install-sh                      | 392 ++++++++++++++---------------
 missing                         | 461 ++++++++++++----------------------
 src/clustal-omega-config.h      |   6 +-
 src/clustal/mbed.c              |   8 +-
 src/hhalign/hhalignment-C.h     | 146 +++++------
 src/hhalign/hhfullalignment-C.h |   6 +-
 src/hhalign/hhhalfalignment-C.h |  10 +-
 src/hhalign/hhhit-C.h           | 106 ++++----
 src/hhalign/hhhitlist-C.h       | 162 ++++++------
 src/hhalign/hhhmm-C.h           |  58 ++---
 src/hhalign/hhmatrices-C.h      |  24 +-
 src/hhalign/hhutil-C.h          |   6 +-
 src/hhalign/util-C.h            |  12 +-
 src/squid/clustal.c             |   6 +-
 src/squid/hsregex.c             |   4 +-
 src/squid/msf.c                 |   8 +-
 28 files changed, 1015 insertions(+), 1133 deletions(-)
 mode change 100755 => 100644 ChangeLog
 delete mode 100644 debian/patches/log2.patch
 delete mode 100644 debian/patches/series

-- 
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