[med-svn] [kineticstools] branch master updated (c5ebe7e -> ecf5447)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository kineticstools.

      from  c5ebe7e   Merge tag 'upstream/0.6.1+dfsg'
       new  26bf6dc   Create get-orig-source script to download upstream source
       new  d210089   New upstream version 0.6.1+dfsg
       new  be06059   Merge tag 'upstream/0.6.1+dfsg'
       new  34e6c9f   Close bug
       new  ecf5447   Adapt patches and and TODO

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                                         |   5 -
 Makefile                                           |   9 +-
 circle.yml                                         |   1 +
 debian/changelog                                   |  12 ++
 debian/get-orig-source                             |  33 ++++
 ...activate-tests-requiring-unavailable-data.patch |  12 +-
 debian/patches/man-pages.patch                     |  26 +--
 debian/patches/verbose-testing.patch               |  14 +-
 doc/whitepaper/ecoli-roc.png                       | Bin 0 -> 26253 bytes
 doc/whitepaper/kinetics.bib                        |  92 +++++++++++
 doc/whitepaper/kinetics.pdf                        | Bin 0 -> 399628 bytes
 doc/whitepaper/kinetics.tex                        | 183 +++++++++++++++++++++
 doc/whitepaper/logo.jpg                            | Bin 0 -> 22613 bytes
 doc/whitepaper/position-influence.png              | Bin 0 -> 88200 bytes
 requirements-ci.txt                                |   8 +-
 requirements-dev.txt                               |   1 +
 requirements-ci.txt => requirements-pb.txt         |  10 --
 test/cram/detection_bam.t                          |   4 +-
 test/cram/detection_bam_dataset.t                  |   4 +-
 test/cram/detection_bam_lossless.t                 |   2 +-
 test/cram/extra/bigwig.t                           |   2 +-
 21 files changed, 363 insertions(+), 55 deletions(-)
 delete mode 100644 .gitignore
 create mode 100755 debian/get-orig-source
 create mode 100644 doc/whitepaper/ecoli-roc.png
 create mode 100644 doc/whitepaper/kinetics.bib
 create mode 100644 doc/whitepaper/kinetics.pdf
 create mode 100644 doc/whitepaper/kinetics.tex
 create mode 100644 doc/whitepaper/logo.jpg
 create mode 100644 doc/whitepaper/position-influence.png
 copy requirements-ci.txt => requirements-pb.txt (63%)

-- 
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