[med-svn] [fast5] branch upstream updated (0d085dc -> d798d48)

[Afif Elghraoui]

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afif pushed a change to branch upstream
in repository fast5.

      from  0d085dc   Imported Upstream version 0.5.8
       new  d798d48   Imported Upstream version 0.5.9

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 .travis.yml                            |   2 +-
 README.org                             |  49 ++++-
 VERSION                                |   2 +-
 python/fast5/version.py                |   2 +-
 python/setup.py                        |   2 +-
 src/.gitignore                         |   5 +-
 src/Makefile                           |  14 +-
 src/f5dump.cpp                         | 366 +++++++++++++++++++--------------
 src/{f5dump-full.cpp => f5ls-full.cpp} |   0
 src/{f5dump.cpp => f5ls.cpp}           |   0
 src/fast5.hpp                          | 169 +++++++++++----
 src/hdf5-mod.cpp                       |   2 +-
 12 files changed, 415 insertions(+), 198 deletions(-)
 mode change 100755 => 100644 python/setup.py
 rename src/{f5dump-full.cpp => f5ls-full.cpp} (100%)
 copy src/{f5dump.cpp => f5ls.cpp} (100%)

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