[med-svn] [pbsuite] branch master updated (92be6e4 -> cf84bd6)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch master
in repository pbsuite.

  discards  92be6e4   Versioned Depends: blasr (>= 5.3-2)
  discards  ef9a146   s/-sdpTupleSize/--sdpTupleSize/
  discards  f6afedb   s/-minPctIdentity/--minPctIdentity/
  discards  96d6142   s/-noSplitSubreads/--noSplitSubreads/
  discards  8602e60   More blasr adaptations
  discards  38252fa   Enable running test script also from command line
  discards  1e533a3   debhelper 10
  discards  51489bb   cme fix dpkg-control
  discards  1191b7d   Try to adapt to change of command line syntax of blasr
       new  cf84bd6   Update pbhoney to blasr 5 interface

This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version.  This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:

 * -- * -- B -- O -- O -- O   (92be6e4)
            \
             N -- N -- N   refs/heads/master (cf84bd6)

You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.

Any revisions marked "omits" are not gone; other references still
refer to them.  Any revisions marked "discards" are gone forever.

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 debian/changelog                                 |  12 -
 debian/compat                                    |   2 +-
 debian/control                                   |  86 +++----
 debian/patches/blasr-5.patch                     | 278 +++++++++++++++++++++++
 debian/patches/fix_new_blasr_interface-sam.patch | 251 --------------------
 debian/patches/fix_new_blasr_interface.patch     | 219 ------------------
 debian/patches/intermediate-reads-files.patch    |  77 +++++++
 debian/patches/series                            |   4 +-
 debian/tests/pbhoney                             |   9 +-
 9 files changed, 406 insertions(+), 532 deletions(-)
 create mode 100644 debian/patches/blasr-5.patch
 delete mode 100644 debian/patches/fix_new_blasr_interface-sam.patch
 delete mode 100644 debian/patches/fix_new_blasr_interface.patch
 create mode 100644 debian/patches/intermediate-reads-files.patch

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbsuite.git