[med-svn] r23403 - in trunk/packages/tab2mage/trunk/debian: . source

Andreas Tille tille at moszumanska.debian.org
Thu Dec 29 23:20:51 UTC 2016 

Author: tille
Date: 2016-12-29 23:20:50 +0000 (Thu, 29 Dec 2016)
New Revision: 23403

Added:
   trunk/packages/tab2mage/trunk/debian/source/
   trunk/packages/tab2mage/trunk/debian/source/format
Removed:
   trunk/packages/tab2mage/trunk/debian/README.Debian
   trunk/packages/tab2mage/trunk/debian/cron.d.ex
   trunk/packages/tab2mage/trunk/debian/menu.ex
   trunk/packages/tab2mage/trunk/debian/tab2mage-default.ex
   trunk/packages/tab2mage/trunk/debian/tab2mage.doc-base.EX
Modified:
   trunk/packages/tab2mage/trunk/debian/compat
   trunk/packages/tab2mage/trunk/debian/control
   trunk/packages/tab2mage/trunk/debian/rules
Log:
Normalise packaging in SVN


Deleted: trunk/packages/tab2mage/trunk/debian/README.Debian
===================================================================
--- trunk/packages/tab2mage/trunk/debian/README.Debian	2016-12-29 23:01:03 UTC (rev 23402)
+++ trunk/packages/tab2mage/trunk/debian/README.Debian	2016-12-29 23:20:50 UTC (rev 23403)
@@ -1,8 +0,0 @@
-tab2mage for Debian
--------------------
-
-Preliminary package, do not expect it to work.
-
-<possible notes regarding this package - if none, delete this file>
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Fri, 11 Apr 2008 10:55:53 +0900

Modified: trunk/packages/tab2mage/trunk/debian/compat
===================================================================
--- trunk/packages/tab2mage/trunk/debian/compat	2016-12-29 23:01:03 UTC (rev 23402)
+++ trunk/packages/tab2mage/trunk/debian/compat	2016-12-29 23:20:50 UTC (rev 23403)
@@ -1 +1 @@
-8
+10

Modified: trunk/packages/tab2mage/trunk/debian/control
===================================================================
--- trunk/packages/tab2mage/trunk/debian/control	2016-12-29 23:01:03 UTC (rev 23402)
+++ trunk/packages/tab2mage/trunk/debian/control	2016-12-29 23:20:50 UTC (rev 23403)
@@ -1,22 +1,40 @@
 Source: tab2mage
-Section: unknown
-Priority: extra
-Maintainer: Charles Plessy <plessy at debian.org>
-Build-Depends: cdbs, quilt, debhelper (>= 8)
-Standards-Version: 3.9.2
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/tab2mage/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/tab2mage/trunk
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Charles Plessy <plessy at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 10)
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/tab2mage/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/tab2mage/trunk
 Homepage: http://tab2mage.sourceforge.net/
 
 Package: tab2mage
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends},
-         libbio-mage-perl, libbio-mage-utils-perl, libwww-perl,
-	 libtie-ixhash-perl, liblist-moreutils-perl,
-	 libtext-csv-perl, libreadonly-xs-perl, libconfig-yaml-perl,
-	 libclass-std-perl, libparse-recdescent-perl
-	 libxml-xerces-perl
-Recommends: libdbi-perl, libdbd-mysql-perl
+Depends: ${misc:Depends},
+         ${perl:Depends},
+         libbio-mage-perl,
+         libbio-mage-utils-perl,
+         libwww-perl,
+         libtie-ixhash-perl,
+         liblist-moreutils-perl,
+         libtext-csv-perl,
+         libreadonly-xs-perl,
+         libconfig-yaml-perl,
+         libclass-std-perl,
+         libparse-recdescent-perl,
+         libxml-xerces-perl
+Recommends: libdbi-perl,
+            libdbd-mysql-perl
 Suggests: graphviz
-Description: <insert up to 60 chars description>
- <insert long description, indented with spaces>
+Description: submitting large microarray experiment datasets to public repository database
+ Tab2MAGE is a software package written and supported by the ArrayExpress
+ curation team, which aims to ease the process of submitting large
+ microarray experiment datasets to our public repository database. To
+ this end, Tab2MAGE currently includes two tools, the tab2mage.pl script
+ itself, and a data file checking script, expt_check.pl. With these
+ scripts it is possible to perform an initial data file validation
+ against an array design (e.g., in the form of an "Array Description
+ File" or ADF), and then to generate MAGE-ML using these data files
+ alongside a separate spreadsheet providing MIAME-compliant sample
+ annotation.

Deleted: trunk/packages/tab2mage/trunk/debian/cron.d.ex
===================================================================
--- trunk/packages/tab2mage/trunk/debian/cron.d.ex	2016-12-29 23:01:03 UTC (rev 23402)
+++ trunk/packages/tab2mage/trunk/debian/cron.d.ex	2016-12-29 23:20:50 UTC (rev 23403)
@@ -1,4 +0,0 @@
-#
-# Regular cron jobs for the tab2mage package
-#
-0 4	* * *	root	tab2mage_maintenance

Deleted: trunk/packages/tab2mage/trunk/debian/menu.ex
===================================================================
--- trunk/packages/tab2mage/trunk/debian/menu.ex	2016-12-29 23:01:03 UTC (rev 23402)
+++ trunk/packages/tab2mage/trunk/debian/menu.ex	2016-12-29 23:20:50 UTC (rev 23403)
@@ -1,2 +0,0 @@
-?package(tab2mage):needs="X11|text|vc|wm" section="Applications/see-menu-manual"\
-  title="tab2mage" command="/usr/bin/tab2mage"

Modified: trunk/packages/tab2mage/trunk/debian/rules
===================================================================
--- trunk/packages/tab2mage/trunk/debian/rules	2016-12-29 23:01:03 UTC (rev 23402)
+++ trunk/packages/tab2mage/trunk/debian/rules	2016-12-29 23:20:50 UTC (rev 23403)
@@ -1,8 +1,7 @@
 #!/usr/bin/make -f
 
-include /usr/share/cdbs/1/rules/patchsys-quilt.mk
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/perlmodule.mk
+%:
+	dh $@
 
 get-orig-source:
 	mkdir -p ../tarballs

Added: trunk/packages/tab2mage/trunk/debian/source/format
===================================================================
--- trunk/packages/tab2mage/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/tab2mage/trunk/debian/source/format	2016-12-29 23:20:50 UTC (rev 23403)
@@ -0,0 +1 @@
+3.0 (quilt)

Deleted: trunk/packages/tab2mage/trunk/debian/tab2mage-default.ex
===================================================================
--- trunk/packages/tab2mage/trunk/debian/tab2mage-default.ex	2016-12-29 23:01:03 UTC (rev 23402)
+++ trunk/packages/tab2mage/trunk/debian/tab2mage-default.ex	2016-12-29 23:20:50 UTC (rev 23403)
@@ -1,10 +0,0 @@
-# Defaults for tab2mage initscript
-# sourced by /etc/init.d/tab2mage
-# installed at /etc/default/tab2mage by the maintainer scripts
-
-#
-# This is a POSIX shell fragment
-#
-
-# Additional options that are passed to the Daemon.
-DAEMON_OPTS=""

Deleted: trunk/packages/tab2mage/trunk/debian/tab2mage.doc-base.EX
===================================================================
--- trunk/packages/tab2mage/trunk/debian/tab2mage.doc-base.EX	2016-12-29 23:01:03 UTC (rev 23402)
+++ trunk/packages/tab2mage/trunk/debian/tab2mage.doc-base.EX	2016-12-29 23:20:50 UTC (rev 23403)
@@ -1,22 +0,0 @@
-Document: tab2mage
-Title: Debian tab2mage Manual
-Author: <insert document author here>
-Abstract: This manual describes what tab2mage is
- and how it can be used to
- manage online manuals on Debian systems.
-Section: unknown
-
-Format: debiandoc-sgml
-Files: /usr/share/doc/tab2mage/tab2mage.sgml.gz
-
-Format: postscript
-Files: /usr/share/doc/tab2mage/tab2mage.ps.gz
-
-Format: text
-Files: /usr/share/doc/tab2mage/tab2mage.text.gz
-
-Format: HTML
-Index: /usr/share/doc/tab2mage/html/index.html
-Files: /usr/share/doc/tab2mage/html/*.html
-
-

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