[med-svn] r23421 - trunk/packages/ensembl/ensembl/trunk/debian
Andreas Tille
tille at moszumanska.debian.org
Sat Dec 31 21:02:55 UTC 2016
Author: tille
Date: 2016-12-31 21:02:54 +0000 (Sat, 31 Dec 2016)
New Revision: 23421
Modified:
trunk/packages/ensembl/ensembl/trunk/debian/compat
trunk/packages/ensembl/ensembl/trunk/debian/control
trunk/packages/ensembl/ensembl/trunk/debian/watch
Log:
Normalise packaging
Modified: trunk/packages/ensembl/ensembl/trunk/debian/compat
===================================================================
--- trunk/packages/ensembl/ensembl/trunk/debian/compat 2016-12-31 20:37:03 UTC (rev 23420)
+++ trunk/packages/ensembl/ensembl/trunk/debian/compat 2016-12-31 21:02:54 UTC (rev 23421)
@@ -1 +1 @@
-7
+10
Modified: trunk/packages/ensembl/ensembl/trunk/debian/control
===================================================================
--- trunk/packages/ensembl/ensembl/trunk/debian/control 2016-12-31 20:37:03 UTC (rev 23420)
+++ trunk/packages/ensembl/ensembl/trunk/debian/control 2016-12-31 21:02:54 UTC (rev 23421)
@@ -1,46 +1,91 @@
Source: ensembl
-Section: non-free/science
-Priority: extra
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Richard Holland <holland at eaglegenomics.com>,
- Steffen Moeller <moeller at debian.org>,
- William Spooner <whs at eaglegenomics.com>,
- Madhu Donepudi <madhu at eaglegenomics.com>,
- Andreas Tille <tille at debian.org>
-DM-Upload-Allowed: yes
-Build-Depends: debhelper (>= 7.0.50~), po-debconf
-Standards-Version: 3.9.2
+ Steffen Moeller <moeller at debian.org>,
+ William Spooner <whs at eaglegenomics.com>,
+ Madhu Donepudi <madhu at eaglegenomics.com>,
+ Andreas Tille <tille at debian.org>
+Section: non-free/science
+XS-Autobuild: no
+Priority: optional
+Build-Depends: debhelper (>= 10),
+ po-debconf
+Standards-Version: 3.9.8
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ensembl/ensembl/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/ensembl/ensembl/trunk/
Homepage: http://www.ensembl.org
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/ensembl/ensembl/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/ensembl/ensembl/trunk/
Package: ensembl
Architecture: all
+Depends: ${misc:Depends},
+ apache2-mpm-prefork,
+ expat,
+ libcgi-pm-perl,
+ libcgi-session-perl,
+ libdb-file-lock-perl,
+ libdbd-mysql,
+ perl-modules,
+ ensembl-bin (>= ${source:Version}),
+ libensembl-core-perl (= ${source:Version}),
+ libensembl-functgenomics-perl (= ${source:Version}),
+ libensembl-compara-perl (= ${source:Version}),
+ libensembl-external-perl (= ${source:Version}),
+ libensembl-variation-perl (= ${source:Version}),
+ liblwp-parallel-perl,
+ mysql-server,
+ mysql-client,
+ jalview,
+ jemboss,
+ tinymce,
+ libjs-prototype,
+ libjs-scriptaculous
+Recommends: ttf-mscorefonts-installer,
+ acedb-other-dotter,
+ libcgi-ajax-perl,
+ libcache-memcached-perl,
+ libclass-dbi-sweet-perl,
+ libclass-std-perl,
+ libclass-std-utils-perl,
+ libcompress-bzip2-perl,
+ perl,
+ libdata-uuid-libuuid-perl,
+ libgd-text-perl,
+ libhash-merge-perl,
+ libhtml-parser-perl,
+ liblist-moreutils-perl,
+ liblog-log4perl-perl,
+ libmailtools-perl,
+ libwww-curl-perl,
+ libapache2-mod-perl2,
+ libnumber-format-perl,
+ libgd-gd2-noxpm-perl,
+ libpdf-api2-perl,
+ libsys-hostname-long-perl,
+ libtemplate-plugin-number-format-perl,
+ libxml-dom-perl,
+ libxml-rss-perl,
+ libxml-simple-perl,
+ libbsd-resource-perl,
+ libxml-xpath-perl,
+ libxml-atom-perl,
+ libjson-perl,
+ libclass-data-inheritable-perl,
+ libconfig-inifiles-perl,
+ libdevel-stacktrace-perl,
+ libexception-class-perl,
+ libhtml-template-perl,
+ libimage-size-perl,
+ libio-string-perl,
+ libipc-run-perl,
+ libxml-libxml-perl,
+ libole-storage-lite-perl,
+ libparse-recdescent-perl,
+ libspreadsheet-writeexcel-perl,
+ libmime-types-perl,
+ libmath-bezier-perl,
+ librtf-writer-perl,
+ libbio-das-lite-perl
Pre-Depends: debconf
-Depends: ${misc:Depends}, apache2-mpm-prefork, expat,
- libcgi-pm-perl, libcgi-session-perl, libdb-file-lock-perl, libdbd-mysql,
- perl-modules, ensembl-bin (>= ${source:Version}),
- libensembl-core-perl (= ${source:Version}),
- libensembl-functgenomics-perl (= ${source:Version}),
- libensembl-compara-perl (= ${source:Version}),
- libensembl-external-perl (= ${source:Version}),
- libensembl-variation-perl (= ${source:Version}),
- liblwp-parallel-perl, mysql-server, mysql-client,
- jalview, jemboss, tinymce, libjs-prototype, libjs-scriptaculous
-Recommends: ttf-mscorefonts-installer, acedb-other-dotter, libcgi-ajax-perl,
- libcache-memcached-perl, libclass-dbi-sweet-perl, libclass-std-perl,
- libclass-std-utils-perl, libcompress-bzip2-perl, libfile-spec-perl,
- libdata-uuid-libuuid-perl, libgd-text-perl, libhash-merge-perl, libhtml-parser-perl,
- liblist-moreutils-perl, liblog-log4perl-perl, libmailtools-perl, libwww-curl-perl,
- libapache2-mod-perl2, libnumber-format-perl, libgd-gd2-noxpm-perl, libpdf-api2-perl,
- libsys-hostname-long-perl, libtemplate-plugin-number-format-perl, libxml-dom-perl,
- libxml-rss-perl, libxml-simple-perl, libbsd-resource-perl, libxml-xpath-perl,
- libxml-atom-perl, libjson-perl, libclass-data-inheritable-perl, libconfig-inifiles-perl,
- libdevel-stacktrace-perl, libexception-class-perl, libhtml-template-perl,
- libimage-size-perl, libio-string-perl, libipc-run-perl, libxml-libxml-perl,
- libole-storage-lite-perl, libparse-recdescent-perl, libspreadsheet-writeexcel-perl,
- libmime-types-perl, libmath-bezier-perl, librtf-writer-perl, libbio-das-lite-perl,
- bioperl1.2.3|bioperl
Description: basic Ensembl genome browser
Ensembl is a joint project of the Sanger Center and the European
Bioinformatics Institute, an outstation of the European Molecular
@@ -77,9 +122,10 @@
Package: libensembl-core-perl
Architecture: all
-Depends: ${misc:Depends}, bioperl1.2.3 | bioperl
+Section: non-free/perl
+Depends: ${misc:Depends},
+ bioperl1.2.3 | bioperl
Suggests: tk
-Section: non-free/perl
Description: core libraries of Ensembl API
The Ensembl project presents the sequence data for the yet
available complete genomes of many vertebrates and is helped by many
@@ -96,9 +142,10 @@
upstream thinks differently here.
Package: libensembl-functgenomics-perl
-Depends: ${misc:Depends},libensembl-core-perl
Architecture: all
Section: non-free/perl
+Depends: ${misc:Depends},
+ libensembl-core-perl
Description: API for functional genomics with Ensembl
The Ensembl project presents the sequence data for the yet
available complete genomes of many vertebrates and is helped by many
@@ -109,9 +156,10 @@
hypoxia, temperature changes, growth, ...) and of course in diseases.
Package: libensembl-compara-perl
-Depends: ${misc:Depends}, libensembl-core-perl (= ${source:Version})
Architecture: all
Section: non-free/perl
+Depends: ${misc:Depends},
+ libensembl-core-perl (= ${source:Version})
Description: API for comparative genomics with Ensembl
The Ensembl project presents the sequence data for the yet
available complete genomes of many vertebrates and is helped by many
@@ -127,9 +175,10 @@
changed mean something?
Package: libensembl-external-perl
-Depends: ${misc:Depends}, libensembl-core-perl (= ${source:Version})
Architecture: all
Section: non-free/perl
+Depends: ${misc:Depends},
+ libensembl-core-perl (= ${source:Version})
Description: API for integration of external data sources with Ensembl
The Ensembl project presents the sequence data for the yet
available complete genomes of many vertebrates and is helped by many
@@ -141,9 +190,10 @@
pacakges.
Package: libensembl-variation-perl
-Depends: ${misc:Depends}, libensembl-core-perl (= ${source:Version})
Architecture: all
Section: non-free/perl
+Depends: ${misc:Depends},
+ libensembl-core-perl (= ${source:Version})
Description: Ensembl API for investigation of inter-individual genomic differences
The Ensembl project presents the sequence data for the yet available
complete genomes of many vertebrates and is helped by many
@@ -156,9 +206,10 @@
ideas for novel drugs at best.
Package: libensembl-draw-perl
-Depends: ${misc:Depends}, libensembl-core-perl (= ${source:Version})
Architecture: all
Section: non-free/perl
+Depends: ${misc:Depends},
+ libensembl-core-perl (= ${source:Version})
Description: Ensembl API for graphical representation of genomic properties
The Ensembl project presents the sequence data for the yet
available complete genomes of many vertebrates and is helped by many
@@ -168,16 +219,17 @@
items graphically.
Package: ensembl-bin
-Depends: ${shlibs:Depends}, ${misc:Depends}
Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
Description: platform-specific files of Ensembl
The Ensembl website is mostly implemented in Perl. But just a few
bits do appear as binaries. Those are gathered in this package.
Package: ensembl-doc
+Architecture: all
+Section: non-free/doc
Depends: ${misc:Depends}
-Section: non-free/doc
-Architecture: all
Description: tutorials and othe documentation for Ensembl
Several Perl packages of Ensmebl offer a description of their API.
The compara package offers a tutorial. Also the Ensembl schema
Modified: trunk/packages/ensembl/ensembl/trunk/debian/watch
===================================================================
--- trunk/packages/ensembl/ensembl/trunk/debian/watch 2016-12-31 20:37:03 UTC (rev 23420)
+++ trunk/packages/ensembl/ensembl/trunk/debian/watch 2016-12-31 21:02:54 UTC (rev 23421)
@@ -1,4 +1,3 @@
-version=3
-#http://www.ensembl.org Release\s+(\d+)\s+
-opts="passive" \
- ftp://ftp.ensembl.org/pub/release-(\d+)
+version=4
+
+http://ftp.ensembl.org/pub/release-(\d+)
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