[med-svn] [iqtree] branch master updated (3e4ff49 -> c7510ed)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository iqtree.

      from  3e4ff49   Upload to new
       new  b8172a0   Imported Upstream version 1.3.13+dfsg
       new  2d30c01   Merge tag 'upstream/1.3.13+dfsg'
       new  56ad3f0   New upstream version
       new  c69d762   Do not use -m32 and -msse flags
       new  b0e94c9   Do not append 32 to binary name if build on 32bit architecture
       new  c7510ed   Drop -mavx option

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                  |  2 +-
 debian/changelog                | 12 ++++++++++++
 debian/patches/32bit_name.patch | 16 ++++++++++++++++
 debian/patches/avoid_mavx.patch | 27 +++++++++++++++++++++++++++
 debian/patches/series           |  3 +++
 debian/patches/sse.patch        | 25 +++++++++++++++++++++++++
 model/modelfactory.h            |  2 +-
 model/ratefree.cpp              | 32 ++++++++++++++++++++++++++++++--
 phyloanalysis.cpp               | 19 ++++++-------------
 phylokernel.h                   | 31 ++++++++++++++++++++++++++++++-
 phylokernelmixrate.h            | 26 ++++++++++++++++++++++++++
 phylokernelmixture.h            | 28 ++++++++++++++++++++++++++++
 phylosupertree.cpp              |  6 +++---
 phylosupertreeplen.cpp          | 38 ++++++++++++++++++++++++--------------
 phylosupertreeplen.h            |  6 ++++++
 phylotesting.cpp                | 10 ++++++++--
 phylotree.cpp                   |  8 ++++----
 phylotree.h                     |  2 +-
 phylotreesse.cpp                | 24 ++++++++++++++++++++++++
 19 files changed, 275 insertions(+), 42 deletions(-)
 create mode 100644 debian/patches/32bit_name.patch
 create mode 100644 debian/patches/avoid_mavx.patch
 create mode 100644 debian/patches/sse.patch

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