[med-svn] [mira] annotated tag debian/3.4.0-2 created (now 37ee75e)

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a change to annotated tag debian/3.4.0-2
in repository mira.

        at  37ee75e   (tag)
   tagging  ff795a85058b829e0ca2c0a2a0327bf52938e77d (commit)
  replaces  upstream/4.9.5
 tagged by  Michael R. Crusoe
        on  Tue Feb 2 07:34:00 2016 -0800

- Log -----------------------------------------------------------------
Debian release 3.4.0-2

Andreas Tille (42):
      s/Debian-Med/Debian Med/
      Adapt to new upstream version; however this FTBFS (probably old version as well)
      Fix duplicate definition of bposhashstat_t()
      Upload to unstable
      Remove the really stupid patch from yesterday that exactly removes what the previous patch was introducing.
      adjacent dotted initials perhaps need a space
      delete debian/README.source which is outdated / wrong
      Wrote manpage for main program
      Fixed some manpages
      obsolete.mira-assembler.install
      Fixed existing manpages
      Reviewed manpage for fasta2frag
      Reviewed fastaselect.1
      Reviewed fastatool.1
      The actual scripts do not contain the .tcl suffix in our installation
      Cut-n-paste fastaselect.1 to fastqselect.1
      Wrote manpage fixACE4consed
      Do not install tools that are deactivated upstream (miraSearchESTSNPs); also fix version number of changelog that was increased by accident
      debian/miraSearchESTSNPs.1: Wrote manpage but mention that this functionality is deactivated in version 3.9.17
      Document exception for deactivated functionality
      Use xz compression in binaries
      Last missing manpage written
      There is another executable deactivated by upstream (miraclip).  There is also no point in installing this.
      Clean up changelog and commit to unstable
      Add Upstream-Contact
      Fix copyright information
      New upstream version - upstream applied most of the patches
      cme fix dpkg-control
      Prevent installing duplicated data, rather create symlink
      Add patch desciption
      Wrote missing manpage
      Upload to unstable
      Adapted to upstream 4.0rc5 (patches are applied upstream)
      There is some strange problem with configure which I can not track down for the moment :-(
      Never observe rc versions
      New upstream version, but no solution for gcc-5 build
      New upstream version, add patch to fix install issue
      Moved debian/upstream to debian/upstream/metadata
      cme fix dpkg-control
      Upload to unstable
      Fix / override several lintian issues; wrote missing manpage
      Remove *.cc files that are created by old flex version which breaks build otherwise (thanks for the hint to Jakub Wilk)

Charles Plessy (26):
      [svn-inject] Installing original source of mira
      [svn-inject] Forking mira source to Trunk
      [svn-inject] Applying Debian modifications to trunk
      autoconf gizmo
      fixing build deps, and building dynamically
      removing empty changelog
      Moving Homepage: field out from the package description.
      Maybe the mira package should be renamed mira-assembler.
      Updated my email address.
      Latest sources of Mira are now on SourceForge.
      Updated build dependancies and converted to CDBS.
      Added some experimental upstream metadata.
      Removed unconditional dependancy on libtcmalloc-minimal0 (debian/control).
      Spellchecked changelog.
      Machine-readable debian/copyright file.
      Uploaded.
      Renamed debian/upstream-metadata.yaml to debian/upstream.
      Split reference in YAML fields.
      Build-depend on libgoogle-perftools-dev instead of libtcmalloc-minimal0.
      Conforms to Policy 3.9.3
      Remove mention of the libtcmalloc-minimal0 hack.
      Remove mention that the package should be renamed mira-assembler.
      Rely on dpkg source format 3.0 (quilt) for the patches, and remove build dependance on quilt.
      Link to /usr/lib/libtcmalloc_minimal.so.4 instead of /usr/lib/libtcmalloc_minimal.so.0.
      Verbose Debhelper.
      mira (3.4.0.1-3) unstable; urgency=low

David Paleino (4):
      Updating Standards-Version to 3.7.3
      Fixing watchfile
      Oops, sorry
      * New upstream release

Dimitri John Ledkov (2):
      * TODO: lintian stuff: manpages
      * Build depend on libboost-all-dev and libbz2-dev.

Michael R. Crusoe (5):
      Merge branch 'upstream'
      Merge tag 'upstream/4.9.5'
      loosen build dependencies
      more spelling fixes
      Imported Upstream version 3.4.0

Morten Kjeldgaard (1):
      removed boilerplate *.ex and *.EX files

Nelson A. de Oliveira (1):
      It's the watch file party! :-D

Steffen Moeller (6):
      Mira -- seems to work
      from perftools to tcmalloc
      Just uploaded mira 3.4 to unstable.
      Several builds later, .... just obeying lintian.
      Got Tim's changes into Debian. Thanks!!
      Imported Debian patch 3.4.0-2

Thorsten Alteholz (5):
      some progress
      some progress on lintian complaints
      progress for rc1
      finally new upstream version
      new upstream version

Tim Booth (7):
      Some fairly major work on this package, as it's important to Bio-Linux users.
      OK, this seems to work as I wanted now.  I believe that installing the
      These build stamps shouldn't be in SVN
      Fixed cleanup so that the source package builds properly - some build files were not being
      Excluding changelog from SVN upload as requested by Andreas.
      Added some dependencies that were missing - flagged by auto-build on Launchpad.
      Small fix to "suggests" dependency on non-existent package

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