[med-svn] [plink1.9] branch master updated (981188b -> 33331a2)

[Dylan Aïssi]

This is an automated email from the git hooks/post-receive script.

bob.dybian-guest pushed a change to branch master
in repository plink1.9.

      from  981188b   d/control: Move Architecture to any-i386 and any-amd64
       new  f88cc47   Merge manpages, install and links files into rules files
       new  203f589   Imported Upstream version 1.90~b3.31-160203
       new  c523f1b   Update d/*
       new  33331a2   Refresh patches

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Rconnection.cc                                |    6 +-
 Rconnection.h                                 |    2 +-
 SFMT.c                                        |   12 +-
 debian/changelog                              |    9 +
 debian/control                                |    6 +-
 debian/manpages                               |    1 -
 debian/patches/01_Fix_use_internal_lib.patch  |    8 +-
 debian/patches/02_Activate_Stable_Build.patch |    2 +-
 debian/plink1.9.install                       |    1 -
 debian/plink1.9.links                         |    1 -
 debian/rules                                  |   15 +-
 hfile.c                                       |    2 +-
 khash.h                                       |    6 +-
 plink.c                                       | 1207 ++++-----
 plink_assoc.c                                 | 2170 ++++++-----------
 plink_assoc.h                                 |    2 -
 plink_calc.c                                  | 1057 ++++----
 plink_calc.h                                  |    2 +-
 plink_cluster.c                               |  661 +++--
 plink_cnv.c                                   |  174 +-
 plink_common.c                                | 3243 ++++++++++++++-----------
 plink_common.h                                | 1321 +++++-----
 plink_data.c                                  | 2860 +++++++++++-----------
 plink_dosage.c                                |  460 ++--
 plink_family.c                                | 1011 ++++----
 plink_filter.c                                |  641 +++--
 plink_filter.h                                |    2 +-
 plink_glm.c                                   | 1657 ++++++-------
 plink_help.c                                  |   26 +-
 plink_homozyg.c                               |  392 ++-
 plink_lasso.c                                 |  141 +-
 plink_ld.c                                    | 2070 ++++++++--------
 plink_matrix.c                                |    6 +-
 plink_misc.c                                  | 1167 +++++----
 plink_perm.c                                  |  553 ++++-
 plink_perm.h                                  |   67 +-
 plink_rserve.c                                |  110 +-
 plink_set.c                                   |  661 +++--
 plink_stats.c                                 |   12 +-
 yarn.c                                        |    1 -
 40 files changed, 10896 insertions(+), 10849 deletions(-)
 delete mode 100644 debian/manpages
 delete mode 100644 debian/plink1.9.install
 delete mode 100644 debian/plink1.9.links

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