[med-svn] [plink1.9] branch upstream updated (597ab21 -> 9d95999)

[Dylan Aïssi]

This is an automated email from the git hooks/post-receive script.

bob.dybian-guest pushed a change to branch upstream
in repository plink1.9.

      from  597ab21   Imported Upstream version 1.90~b3.28-151216
       new  9d95999   Imported Upstream version 1.90~b3.31-160203

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Rconnection.cc  |    6 +-
 Rconnection.h   |    2 +-
 SFMT.c          |   12 +-
 hfile.c         |    2 +-
 khash.h         |    6 +-
 plink.c         | 1207 ++++++++++-----------
 plink_assoc.c   | 2170 ++++++++++++++-----------------------
 plink_assoc.h   |    2 -
 plink_calc.c    | 1057 +++++++++---------
 plink_calc.h    |    2 +-
 plink_cluster.c |  661 ++++++------
 plink_cnv.c     |  174 ++-
 plink_common.c  | 3243 +++++++++++++++++++++++++++++++------------------------
 plink_common.h  | 1321 ++++++++++++----------
 plink_data.c    | 2860 ++++++++++++++++++++++++------------------------
 plink_dosage.c  |  460 ++++----
 plink_family.c  | 1011 ++++++++---------
 plink_filter.c  |  641 ++++++-----
 plink_filter.h  |    2 +-
 plink_glm.c     | 1657 ++++++++++++----------------
 plink_help.c    |   26 +-
 plink_homozyg.c |  392 +++----
 plink_lasso.c   |  141 +--
 plink_ld.c      | 2070 ++++++++++++++++++-----------------
 plink_matrix.c  |    6 +-
 plink_misc.c    | 1167 ++++++++++----------
 plink_perm.c    |  553 +++++++++-
 plink_perm.h    |   67 +-
 plink_rserve.c  |  110 +-
 plink_set.c     |  661 +++++-------
 plink_stats.c   |   12 +-
 yarn.c          |    1 -
 32 files changed, 10866 insertions(+), 10836 deletions(-)

-- 
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