[med-svn] r21382 - trunk/packages/aegean/trunk/debian
Sascha Steinbiss
sascha-guest at moszumanska.debian.org
Sat Feb 6 14:35:59 UTC 2016
Author: sascha-guest
Date: 2016-02-06 14:35:58 +0000 (Sat, 06 Feb 2016)
New Revision: 21382
Added:
trunk/packages/aegean/trunk/debian/README.status
Removed:
trunk/packages/aegean/trunk/debian/README.source
trunk/packages/aegean/trunk/debian/aegean.docs
trunk/packages/aegean/trunk/debian/aegean.install
trunk/packages/aegean/trunk/debian/aegean.links
trunk/packages/aegean/trunk/debian/aegean.manpages
trunk/packages/aegean/trunk/debian/changelog
trunk/packages/aegean/trunk/debian/compat
trunk/packages/aegean/trunk/debian/control
trunk/packages/aegean/trunk/debian/copyright
trunk/packages/aegean/trunk/debian/man/
trunk/packages/aegean/trunk/debian/patches/
trunk/packages/aegean/trunk/debian/rules
trunk/packages/aegean/trunk/debian/source/
trunk/packages/aegean/trunk/debian/tests/
trunk/packages/aegean/trunk/debian/upstream/
trunk/packages/aegean/trunk/debian/watch
Log:
add git migration note, clean up directory
Deleted: trunk/packages/aegean/trunk/debian/README.source
===================================================================
--- trunk/packages/aegean/trunk/debian/README.source 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/README.source 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1 +0,0 @@
-Please use the 'get-orig-source' rules target to get the source. It needs to be repacked for dfsg reasons.
Added: trunk/packages/aegean/trunk/debian/README.status
===================================================================
--- trunk/packages/aegean/trunk/debian/README.status (rev 0)
+++ trunk/packages/aegean/trunk/debian/README.status 2016-02-06 14:35:58 UTC (rev 21382)
@@ -0,0 +1 @@
+This package has been migrated to Git: https://anonscm.debian.org/git/debian-med/aegean.git
Deleted: trunk/packages/aegean/trunk/debian/aegean.docs
===================================================================
--- trunk/packages/aegean/trunk/debian/aegean.docs 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/aegean.docs 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1 +0,0 @@
-README.md
Deleted: trunk/packages/aegean/trunk/debian/aegean.install
===================================================================
--- trunk/packages/aegean/trunk/debian/aegean.install 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/aegean.install 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1,8 +0,0 @@
-bin/parseval usr/bin
-bin/locuspocus usr/bin
-bin/xtractore usr/bin
-bin/canon-gff3 usr/bin
-bin/pmrna usr/bin
-bin/gaeval usr/bin
-bin/tidygff3 usr/bin
-share/aegean usr/share
Deleted: trunk/packages/aegean/trunk/debian/aegean.links
===================================================================
--- trunk/packages/aegean/trunk/debian/aegean.links 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/aegean.links 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1,4 +0,0 @@
-/usr/share/javascript/mootools/mootools.js /usr/share/aegean/vendor/mootools-core-1.3.2-full-nocompat-yc.js
-/usr/share/javascript/mootools/mootools-more.js /usr/share/aegean/vendor/mootools-more-1.3.2.1.js
-/usr/share/javascript/jquery/jquery.js /usr/share/aegean/vendor/jquery.js
-/usr/share/javascript/jquery-datatables/jquery.dataTables.js /usr/share/aegean/vendor/jquery.dataTables.js
Deleted: trunk/packages/aegean/trunk/debian/aegean.manpages
===================================================================
--- trunk/packages/aegean/trunk/debian/aegean.manpages 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/aegean.manpages 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1 +0,0 @@
-debian/man/*
Deleted: trunk/packages/aegean/trunk/debian/changelog
===================================================================
--- trunk/packages/aegean/trunk/debian/changelog 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/changelog 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1,51 +0,0 @@
-aegean (0.15.1+dfsg-3) UNRELEASED; urgency=medium
-
- [ Jon Ison, Steffen Moeller, Sascha Steinbiss ]
- * Added EDAM annotation.
-
- -- Steffen Moeller <moeller at debian.org> Fri, 05 Feb 2016 20:30:36 +0100
-
-aegean (0.15.1+dfsg-2) unstable; urgency=medium
-
- * Remove broken archs, as revealed by newly added tests.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Sat, 09 Jan 2016 18:28:59 +0000
-
-aegean (0.15.1+dfsg-1) unstable; urgency=medium
-
- * New upstream release.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Sat, 09 Jan 2016 14:16:31 +0000
-
-aegean (0.14.1+dfsg2-2) unstable; urgency=low
-
- * d/rules: build w/o parallelism, set LC_ALL
- * patch Makefile to remove nondeterminism
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Sun, 29 Nov 2015 19:19:01 +0000
-
-aegean (0.14.1+dfsg2-1) unstable; urgency=medium
-
- * Exclude DataTables JS source, add Depends to new package
- Closes: #798900
- * Remove now redundant Lintian override
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Fri, 27 Nov 2015 22:35:59 +0000
-
-aegean (0.14.1+dfsg-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Sat, 10 Oct 2015 09:43:34 +0000
-
-aegean (0.13.0+dfsg-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Tue, 28 Jul 2015 08:50:09 +0000
-
-aegean (0.10.2+dfsg-1) unstable; urgency=low
-
- * Initial release (Closes: #769162)
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Tue, 11 Nov 2014 11:14:11 +0000
Deleted: trunk/packages/aegean/trunk/debian/compat
===================================================================
--- trunk/packages/aegean/trunk/debian/compat 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/compat 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1 +0,0 @@
-9
Deleted: trunk/packages/aegean/trunk/debian/control
===================================================================
--- trunk/packages/aegean/trunk/debian/control 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/control 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1,41 +0,0 @@
-Source: aegean
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Sascha Steinbiss <sascha at steinbiss.name>
-Section: science
-Priority: optional
-Build-Depends: debhelper (>= 9),
- libcairo2-dev,
- libgenometools0-dev,
- python,
- git
-Standards-Version: 3.9.6
-Testsuite: autopkgtest
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/aegean/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/aegean/trunk/
-Homepage: http://standage.github.io/AEGeAn
-
-Package: aegean
-Architecture: amd64 arm64 armel armhf i386 mipsel powerpc ppc64el s390x hurd-i386 kfreebsd-amd64 kfreebsd-i386 ppc64 x32
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- libjs-jquery,
- libjs-jquery-datatables,
- libjs-mootools,
- libgenometools0
-Description: integrated genome analysis toolkit
- The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome
- Annotations. The toolkit includes a variety of analysis programs, e.g. for
- comparing distinct sets of gene structure annotations (ParsEval), computation
- of gene loci (LocusPocus) and more.
-
-Package: aegean-dbg
-Architecture: amd64 arm64 armel armhf i386 mipsel powerpc ppc64el s390x hurd-i386 kfreebsd-amd64 kfreebsd-i386 ppc64 x32
-Section: debug
-Priority: extra
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- aegean (= ${binary:Version})
-Description: integrated genome analysis toolkit, with debug symbols
- This package contains debug information stripped from AEGeAn.
- You may decide to install it to help identifying issues, typically
- to help communication with upstream developers.
Deleted: trunk/packages/aegean/trunk/debian/copyright
===================================================================
--- trunk/packages/aegean/trunk/debian/copyright 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/copyright 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1,21 +0,0 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: aegean
-Source: http://aegean.readthedocs.org/en/v0.10.2/license.html
-Files-Excluded: data/share/vendor/jquery.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/jquery.js data/share/vendor/jquery.dataTables.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/jquery.dataTables.js data/share/vendor/mootools-core-1.3.2-full-nocompat-yc.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/mootools-core-1.3.2-full-nocompat-yc.js data/share/vendor/mootools-more-1.3.2.1.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/mootools-more-1.3.2.1.js
-
-Files:
- *
-Copyright:
- 2010-2015, Daniel S. Standage and CONTRIBUTORS
-License: ISC
- Permission to use, copy, modify, and/or distribute this software for any
- purpose with or without fee is hereby granted, provided that the above
- copyright notice and this permission notice appear in all copies.
- .
- THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
- WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
- MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
- ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
- WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
- ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
- OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
\ No newline at end of file
Deleted: trunk/packages/aegean/trunk/debian/rules
===================================================================
--- trunk/packages/aegean/trunk/debian/rules 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/rules 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1,39 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-
-DH_VERBOSE=1
-DEBVERS := $(shell dpkg-parsechangelog | sed -n -e 's/^Version: //p')
-VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[[:digit:]]*://' -e 's/[~-].*//')
-OVERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[[:digit:]]*://' -e 's/[+].*//')
-export DESTDIR=$(CURDIR)/debian/tmp
-export LC_ALL=C.UTF-8
-
-BITS:=$(shell dpkg-architecture | grep DEB_BUILD_ARCH_BITS | cut -f 2 -d'=')
-ifeq ($(BITS),64)
- 64BIT:=yes
-else
- 64BIT:=no
-endif
-
-%:
- dh $@
-
-override_dh_auto_build:
- dh_auto_build -- prefix=$(DESTDIR) 64bit=$(64BIT) errorcheck=no
-
-override_dh_auto_test:
- dh_auto_test -- useshared=yes 64bit=$(64BIT) testthreads=5
-
-override_dh_auto_install:
- dh_auto_install -- 64bit=$(64BIT) prefix=$(DESTDIR)
-
-override_dh_strip:
- dh_strip --dbg-package=aegean-dbg
-
-override_dh_installdocs:
- cp $(CURDIR)/README.md $(CURDIR)/README
- dh_installdocs
-
-get-orig-source:
- uscan --verbose --force-download --repack --compression xz --destdir=..
- mv ../aegean_$(OVERSION).orig.tar.xz ../aegean_$(VERSION).orig.tar.xz
Deleted: trunk/packages/aegean/trunk/debian/watch
===================================================================
--- trunk/packages/aegean/trunk/debian/watch 2016-02-06 14:08:46 UTC (rev 21381)
+++ trunk/packages/aegean/trunk/debian/watch 2016-02-06 14:35:58 UTC (rev 21382)
@@ -1,4 +0,0 @@
-version=3
-opts=uversionmangle=s/(\d)[_\.\-\+]?((RC|rc|pre|dev|beta|alpha|b|a)\d*)$/$1~$2/,dversionmangle=s/\+(debian|dfsg|ds|deb)\d*$// \
-https://github.com/standage/AEGeAn/tags .*/v?(\d.*)\.(?:tgz|tbz2|txz|tar\.(?:gz|bz2|xz))
-
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