[med-svn] [partitionfinder] branch master updated (d14da4c -> 45a2bac)

[Kevin Murray]

This is an automated email from the git hooks/post-receive script.

daube-guest pushed a change to branch master
in repository partitionfinder.

      from  d14da4c   depend on sklearn, add manpages
       new  458e426   Remove .py extension from binary names
       new  f2da7eb   Add missing build deps
       new  86ef0c0   Correct install path of scripts and module
       new  035fba9   use wrapper scripts to set PYTHONPATH
       new  da11a0e   Add autopkg tests
       new  5ab9aa1   Add missing dependencies
       new  2c25d3e   Depend on raxml and phyml
       new  8fd99a7   Add patch to fix path lookups
       new  b0909d3   Allow stderr in autopkgtests
       new  d2c4e75   Add tests
       new  3a2497c   Only test unit test scripts
       new  890542d   Use scripts to run tests
       new  45a2bac   Add missing pytest-capturelog builddep

The 13 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/PartitionFinder                             |  3 ++
 debian/{PartitionFinder.py.1 => PartitionFinder.1} | 31 +++++++-------
 debian/PartitionFinderProtein                      |  3 ++
 ...FinderProtein.py.1 => PartitionFinderProtein.1} | 28 ++++++-------
 debian/control                                     | 16 +++++++
 debian/partitionfinder.install                     |  9 ++--
 debian/partitionfinder.lintian-overrides           |  2 -
 .../0001-Add-crunchbangs-and-chmod-x-scripts.patch | 33 ---------------
 ...-raxml-path-locate-binaries-under-usr-bin.patch | 49 ++++++++++++++++++++++
 debian/patches/series                              |  2 +-
 debian/rules                                       | 14 ++++++-
 debian/tests/aa                                    |  4 ++
 debian/tests/control                               |  3 ++
 debian/tests/dna                                   |  3 ++
 14 files changed, 128 insertions(+), 72 deletions(-)
 create mode 100644 debian/PartitionFinder
 rename debian/{PartitionFinder.py.1 => PartitionFinder.1} (83%)
 create mode 100644 debian/PartitionFinderProtein
 rename debian/{PartitionFinderProtein.py.1 => PartitionFinderProtein.1} (84%)
 mode change 100644 => 100755 debian/partitionfinder.install
 delete mode 100644 debian/partitionfinder.lintian-overrides
 delete mode 100644 debian/patches/0001-Add-crunchbangs-and-chmod-x-scripts.patch
 create mode 100644 debian/patches/0001-Fix-raxml-path-locate-binaries-under-usr-bin.patch
 create mode 100644 debian/tests/aa
 create mode 100644 debian/tests/control
 create mode 100644 debian/tests/dna

-- 
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