[med-svn] [spades] 06/07: add patches

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository spades.

commit 20d4c38f0c2fa976d08e3d7a45aee5074eb5bd4a
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Sat Feb 6 21:38:52 2016 +0000

    add patches
---
 debian/patches/0112_spelling.patch     | 22 ++++++++++++++++++++++
 debian/patches/0113_add_hashbang.patch |  9 +++++++++
 debian/patches/series                  |  2 ++
 3 files changed, 33 insertions(+)

diff --git a/debian/patches/0112_spelling.patch b/debian/patches/0112_spelling.patch
new file mode 100644
index 0000000..b0bcb18
--- /dev/null
+++ b/debian/patches/0112_spelling.patch
@@ -0,0 +1,22 @@
+Description: minor spelling fixes
+Author: Sascha Steinbiss <sascha at steinbiss.name>
+--- a/src/dipspades/polymorphic_bulge_remover/bulge_splitter.hpp
++++ b/src/dipspades/polymorphic_bulge_remover/bulge_splitter.hpp
+@@ -260,7 +260,7 @@
+ 		SplitOppositeEdge(split_res, split_paths.second, split_partlens.second);
+ 
+ 		// update non splitted path
+-		TRACE("Update non splitted path");
++		TRACE("Update non-split path");
+ 		if(num_splits.second != 0){
+ 			size_t edge_ind = vertices_to_split_[indexes.first].edge_ind_ + 1;
+ 			split_paths.first.push_back(default_paths.first[edge_ind]);
+@@ -445,7 +445,7 @@
+ 			auto split_res = spaths_splitter.SplitSubpaths(
+ 					subpath_range(0, bulge->path1().size() - 1),
+ 					subpath_range(0, bulge->path2().size() - 1));
+-			TRACE("bulge was splitted");
++			TRACE("bulge was split");
+ 			TRACE("1st new bulge side - " << SimplePathWithVerticesToString(graph_, split_res.path1()));
+ 			TRACE("2nd new bulge side - " << SimplePathWithVerticesToString(graph_, split_res.path2()));
+ 			return shared_ptr<BaseBulge>(new Bulge(graph_, graph_.k(), split_res.path1(), split_res.path2()));
diff --git a/debian/patches/0113_add_hashbang.patch b/debian/patches/0113_add_hashbang.patch
new file mode 100644
index 0000000..573a385
--- /dev/null
+++ b/debian/patches/0113_add_hashbang.patch
@@ -0,0 +1,9 @@
+Description: add hashbang line to script
+Author: Sascha Steinbiss <sascha at steinbiss.name>
+--- a/spades_init.py
++++ b/spades_init.py
+@@ -1,3 +1,4 @@
++#!/usr/bin/env python
+ ############################################################################
+ # Copyright (c) 2015 Saint Petersburg State University
+ # Copyright (c) 2011-2014 Saint Petersburg Academic University
diff --git a/debian/patches/series b/debian/patches/series
index b32ddb5..48cf49d 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -12,3 +12,5 @@
 # use-debian-packaged-yaml-cpp.patch   ## <<-- does not work - see patch description
 0110_build_single_thread.patch
 0111_use_full_config_dirs.patch
+0112_spelling.patch
+0113_add_hashbang.patch

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