[med-svn] [spades] 01/01: add more spelling situations

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository spades.

commit 4f023aa90e07fc20f47b5f6e9d4a9c4c7e04de04
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Sat Feb 6 22:03:10 2016 +0000

    add more spelling situations
---
 debian/patches/0112_spelling.patch | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

diff --git a/debian/patches/0112_spelling.patch b/debian/patches/0112_spelling.patch
index b0bcb18..727256c 100644
--- a/debian/patches/0112_spelling.patch
+++ b/debian/patches/0112_spelling.patch
@@ -20,3 +20,36 @@ Author: Sascha Steinbiss <sascha at steinbiss.name>
  			TRACE("1st new bulge side - " << SimplePathWithVerticesToString(graph_, split_res.path1()));
  			TRACE("2nd new bulge side - " << SimplePathWithVerticesToString(graph_, split_res.path2()));
  			return shared_ptr<BaseBulge>(new Bulge(graph_, graph_.k(), split_res.path1(), split_res.path2()));
+--- a/src/dipspades/polymorphic_bulge_remover/bulge_gluer.hpp
++++ b/src/dipspades/polymorphic_bulge_remover/bulge_gluer.hpp
+@@ -74,7 +74,7 @@
+ 		auto splitted_bulge = splitter_.SplitBulge(directed_bulge, glue_def_res);
+ 
+ 		if(IsSplittedBulgeCorrect(splitted_bulge)){
+-			TRACE("Splitted bulge correct");
++			TRACE("Split bulge correct");
+ 			GlueSplittedBulge(splitted_bulge);
+ 			return true;
+ 		}
+--- a/src/debruijn/pacbio/pac_index.hpp
++++ b/src/debruijn/pacbio/pac_index.hpp
+@@ -585,7 +585,7 @@
+                             || !IsConsistent(s, *(iter->second),
+                                              *(next_iter->second))) {
+                         if (next_iter != cur_cluster.end()) {
+-                            DEBUG("clusters splitted:");
++                            DEBUG("clusters split:");
+                             DEBUG("on "<< iter->second->str(g_));
+ 			    DEBUG("and " << next_iter->second->str(g_));
+                         }
+--- a/src/dipspades/kmer_gluing/equal_sequence_gluer.hpp
++++ b/src/dipspades/kmer_gluing/equal_sequence_gluer.hpp
+@@ -74,7 +74,7 @@
+ 				pos2 = graph_.length(edge1) - tmp - 1;
+ 			}
+             INFO(pos1 << " " << pos2 << " " << graph_.length(edge1))
+-			TRACE("Edge1 " << graph_.int_id(edge1) << " will be splitted");
++			TRACE("Edge1 " << graph_.int_id(edge1) << " will be split");
+ 			pair<EdgeId, EdgeId> split_edges = graph_.SplitEdge(edge1, pos1 + 1);
+ 			TRACE("Splitted pair was created");
+ 			TRACE("New edge1: " << graph_.int_id(split_edges.first) << ", length: " << graph_.length(split_edges.first));

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