[med-svn] [spades] 01/01: add ext/ licenses
Sascha Steinbiss
sascha at steinbiss.name
Sun Feb 7 16:50:32 UTC 2016
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sascha-guest pushed a commit to branch master
in repository spades.
commit 5ca9c90c7aab85a881f50a48311096b55239f98e
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date: Sun Feb 7 16:49:12 2016 +0000
add ext/ licenses
TBD: src/ -- there's still some fun hidden in the Cmake modules
---
debian/copyright | 242 +++++++++++++++++++++++++++++++++++++++++++++----------
1 file changed, 199 insertions(+), 43 deletions(-)
diff --git a/debian/copyright b/debian/copyright
index 275c5f7..3c7c056 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -18,49 +18,14 @@ Files-Excluded:
ext/src/samtools/win32
Files: *
-Copyright: 2011-2013 Saint-Petersburg Academic University
+Copyright: 2011-2014 Saint-Petersburg Academic University
+ 2015 Saint Petersburg State University
License: GPL-2+
-Files: ext/include/ConsensusCore/*
-Copyright: 2011-2013, Pacific Biosciences of California, Inc.
-License: BSDlike
- Redistribution and use in source and binary forms, with or without
- modification, are permitted (subject to the limitations in the
- disclaimer below) provided that the following conditions are met:
- .
- * Redistributions of source code must retain the above copyright
- notice, this list of conditions and the following disclaimer.
- .
- * Redistributions in binary form must reproduce the above
- copyright notice, this list of conditions and the following
- disclaimer in the documentation and/or other materials provided
- with the distribution.
- .
- * Neither the name of Pacific Biosciences nor the names of its
- contributors may be used to endorse or promote products derived
- from this software without specific prior written permission.
- .
- NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
- GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
- BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
- WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
- OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
- DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
- CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
- SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
- LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
- USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
- ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
- OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
- OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
- SUCH DAMAGE.
-Comment: This is a code copy from
- https://github.com/PacificBiosciences/ConsensusCore
- It might make sense to package this for Debian separately since it is
- in the field of Debian Med
-
Files: debian/*
-Copyright: 2014 Andreas Tille <tille at debian.org>
+Copyright: 2014-2016 Andreas Tille <tille at debian.org>
+ 2015 Afif Elghraoui <afif at ghraoui.name>
+ 2016 Sascha Steinbiss <sascha at steinbiss.name>
License: GPL-2+
License: GPL-2+
@@ -82,7 +47,7 @@ License: GPL-2+
License version 2 at /usr/share/common-licenses/GPL-2.
Files: src/hammer/parallel_radix_sort.hpp
-Copyright: 2010 Takuya Akiba
+Copyright: (c) 2010 Takuya Akiba
License: BSD-3-clause-Akiba
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
@@ -113,7 +78,13 @@ License: BSD-3-clause-Akiba
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Files: src/include/xmath.h
-Copyright: 2005 Google Inc.
+Copyright: (c) 2005 Google Inc.
+License: BSD-3-clause-Google
+
+Files: src/include/sparsehash/*
+Copyright: (c) 2005 Google Inc.
+License: BSD-3-clause-Google
+
License: BSD-3-clause-Google
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
@@ -141,4 +112,189 @@ License: BSD-3-clause-Google
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
- OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Files: ext/include/ConsensusCore/*
+ ext/src/ConsensusCore/*
+Copyright: 2011-2013 Pacific Biosciences of California, Inc. All rights reserved.
+License: BSD-3-clause-PacBio
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted (subject to the limitations in the
+ disclaimer below) provided that the following conditions are met:
+ .
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ .
+ * Redistributions in binary form must reproduce the above
+ copyright notice, this list of conditions and the following
+ disclaimer in the documentation and/or other materials provided
+ with the distribution.
+ .
+ * Neither the name of Pacific Biosciences nor the names of its
+ contributors may be used to endorse or promote products derived
+ from this software without specific prior written permission.
+ .
+ NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
+ GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
+ BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
+ WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
+ CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
+ USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+ OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
+ SUCH DAMAGE.
+Comment:
+ This is a code copy from
+ https://github.com/PacificBiosciences/ConsensusCore
+ It might make sense to package this for Debian separately since it is
+ in the field of Debian Med.
+
+Files: ext/include/bamtools/*
+ ext/src/bamtools/*
+Copyright: (c) 2009-2010 Derek Barnett, Erik Garrison, Gabor Marth, Michael Stromberg
+License: MIT
+
+Files: ext/include/kseq/*
+Copyright: (c) 2008, 2009, 2011 Attractive Chaos <attractor at live.co.uk>
+License: MIT
+
+Files: ext/include/libcxx/sort.hpp
+Copyright: LLVM Developers <llvm-dev at lists.llvm.org>
+License: MIT
+Comment: This file is taken from LLVM's libc++.
+ See http://llvm.org/docs/DeveloperPolicy.html#license.
+
+Files: ext/include/nlopt/*
+ ext/src/nlopt/*
+Copyright: (c) 2007-2012 Massachusetts Institute of Technology
+License: MIT
+
+Files: ext/src/samtools/*
+Copyright: (c) 2008-2009 Genome Research Ltd.
+License: MIT
+
+Files: ext/src/ssw/*
+Copyright: (c) 2012-1015 Boston College <zhangmp at bc.edu>
+License: MIT
+
+Files: ext/include/yaml-cpp/*
+ ext/src/yaml-cpp/*
+Copyright: (c) 2008-2015 Jesse Beder
+License: MIT
+Comment:
+ The original license can be found at:
+ https://github.com/jbeder/yaml-cpp/blob/master/LICENSE
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ THE SOFTWARE.
+
+Files: ext/include/btree/*
+Copyright: 2013 Google Inc.
+License: Apache-2
+
+Files: ext/include/folly/*
+Copyright: 2014 Facebook, Inc.
+License: Apache-2
+
+License: Apache-2
+ Licensed under the Apache License, Version 2.0 (the "License");
+ you may not use this file except in compliance with the License.
+ You may obtain a copy of the License at
+ .
+ http://www.apache.org/licenses/LICENSE-2.0
+ .
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+
+Files: ext/include/cppformat/*
+ ext/src/cppformat/*
+Copyright: (c) 2012-2014 Victor Zverovich
+License: BSD-2-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ 1. Redistributions of source code must retain the above copyright notice, this
+ list of conditions and the following disclaimer.
+ 2. Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Files: ext/include/jemalloc/*
+ ext/src/jemalloc/*
+Copyright: (C) 2002-2015 Jason Evans <jasone at canonware.com>. All rights reserved.
+ (C) 2007-2012 Mozilla Foundation. All rights reserved.
+ (C) 2009-2015 Facebook, Inc. All rights reserved.
+License: BSD-2-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ 1. Redistributions of source code must retain the above copyright notice(s),
+ this list of conditions and the following disclaimer.
+ 2. Redistributions in binary form must reproduce the above copyright notice(s),
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER(S) ``AS IS'' AND ANY EXPRESS
+ OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+ MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+ EVENT SHALL THE COPYRIGHT HOLDER(S) BE LIABLE FOR ANY DIRECT, INDIRECT,
+ INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+ PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+ LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
+ OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Files: ext/include/getopt_pp/*
+Copyright: (C) 2007, 2008 Daniel Gutson, FuDePAN
+License: GPL-3+
+
+License: GPL-3+
+ This program is free software; you can redistribute it and/or modify it under
+ the terms of the GNU General Public License as published by the Free Software
+ Foundation, either version 3 of the License, or (at your option) any later
+ version.
+ .
+ This program is distributed in the hope that it will be useful, but WITHOUT ANY
+ WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+ PARTICULAR PURPOSE. See the GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License along with
+ this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License can be found in `/usr/share/common-licenses/GPL-3'.
\ No newline at end of file
--
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