[med-svn] [genometools] 02/04: fix spelling

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository genometools.

commit 968e501ff7d5b20a2880a9bd08e46f3ebf643e5c
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Sun Feb 7 10:09:07 2016 +0000

    fix spelling
---
 debian/changelog        |  3 ++-
 debian/patches/spelling | 33 +++++++++++++++++++++++++++++++++
 2 files changed, 35 insertions(+), 1 deletion(-)

diff --git a/debian/changelog b/debian/changelog
index 00366f6..078c535 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,7 @@
 genometools (1.5.8-2) UNRELEASED; urgency=medium
 
-  * Document migration to Git in d/control.
+  * Document migration to Git in d/control
+  * Fix spelling
 
  -- Sascha Steinbiss <sascha at steinbiss.name>  Sat, 06 Feb 2016 13:59:51 +0000
 
diff --git a/debian/patches/spelling b/debian/patches/spelling
index d7c171b..a9ebd39 100644
--- a/debian/patches/spelling
+++ b/debian/patches/spelling
@@ -184,3 +184,36 @@ Last-Update: 2016-01-07
                             <em>-duplicates</em>: duplicates found)
  </p>
  </li>
+--- a/src/match/eis-encidxseq.c
++++ b/src/match/eis-encidxseq.c
+@@ -50,7 +50,7 @@
+   {                                                              \
+     switch (retcode) {                                           \
+     case EIS_INTEGRITY_CHECK_INVALID_SYMBOL:                     \
+-      fprintf(stderr, "Comparision failed at position "GT_WU""   \
++      fprintf(stderr, "Comparison failed at position "GT_WU""   \
+               ", reference symbol: %u, symbol read: %u\n",       \
+               pos, symOrig, symEnc);                             \
+       gt_error_set(err, "Invalid symbol encountered.");          \
+--- a/src/tools/gt_compreads_decompress.c
++++ b/src/tools/gt_compreads_decompress.c
+@@ -119,7 +119,7 @@
+   gt_option_parser_add_option(op, option);
+ 
+   option = gt_option_new_uword("width",
+-                               "set width of output, 0 disables formating. "
++                               "set width of output, 0 disables formatting. "
+                                "line breaks in quality strings can cause "
+                                "problems with parsers, use with care",
+                                &arguments->width, 0);
+--- a/src/tools/gt_kmer_database.c
++++ b/src/tools/gt_kmer_database.c
+@@ -109,7 +109,7 @@
+   gt_option_imply(option_use_cutoff, option);
+ 
+   /* -set_cutoff */
+-  option = gt_option_new_uword_min("set_cutoff", "kmers occuring more often "
++  option = gt_option_new_uword_min("set_cutoff", "kmers occurring more often "
+                                    "than this value won't be saved",
+                                    &arguments->cutoff_value, (GtUword) 30,
+                                    (GtUword) 1);

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