[med-svn] [tophat] annotated tag 2.1.0+dfsg-1_bpo8+1 created (now 70e45e8)
Charles Plessy
plessy at moszumanska.debian.org
Thu Feb 11 12:48:53 UTC 2016
This is an automated email from the git hooks/post-receive script.
plessy pushed a change to annotated tag 2.1.0+dfsg-1_bpo8+1
in repository tophat.
at 70e45e8 (tag)
tagging e2e5a0340336dc5000d0fa5e512533a822f99690 (commit)
replaces upstream/2.1.0+dfsg
tagged by Charles Plessy
on Thu Feb 11 21:48:03 2016 +0900
- Log -----------------------------------------------------------------
tophat (2.1.0+dfsg-1~bpo8+1) jessie-backports; urgency=medium
* Team upload.
* Rebuild for jessie-backports.
-- Charles Plessy <plessy at debian.org> Thu, 11 Feb 2016 21:36:04 +0900
Prepared for https://www.biostars.org/p/173478/
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Alexandre Mestiashvili (60):
Merge commit 'upstream/1.3.3'
New upstream release 1.3.3
Removed dh-make template from watch file
some cleanup in debian/* ;see debian/changelog for details
added patch to fix ax_bam.m4 , changed rules to use autoreconf
src/bam_merge.cpp contains bam/bam.h bam/sam.h headers ,
No need in fix_configure.patch patch , replaced by bam2samtools.
Added Build-Depends: dh-autoreconf
Use seqan lib from debian and not from source
removed wrong new line in debian/control
Added build-dependency quilt
in new seqan v1.3 function reverseInPlace seems to be renamed to reverse
debian/control python-all denepdency
Added seqan-dev dependency
debian/control Added python dependency to binary package
updated changelog
Removed quilt patch management.
Added DEP3 headers to patches.
Added Pre-Depends: dpkg (>= 1.15.6) (xz compression)
Merge tag 'upstream/2.0.0'
updated debian/patches
debian/control added libboost-thread-dev dependency
debian/control Standards-Version: 3.9.3 Depends: bowtie2
debian/get-orig-source - removes shipped with tophat SeqAn files.
Merge tag 'upstream/2.0.3'
tophat depends on bowtie or bowtie2
refreshed debian/patches/fix_includes_path.patch
unreleased->unstable
Merge tag 'upstream/2.0.5'
ready for upload to unstable
updated source filed
Merge tag 'upstream/2.0.7'
upload to unstable
Merge tag 'upstream/2.0.8'
upload to unstable
- d/get-orig-source: fix tarball location
Merge tag 'upstream/2.0.8b'
updated changelog
d/get-orig-source: place tarballs to ../tarballs/
- d/control: use canonical vcs fields, Standards-Version: 3.9.4
Merge tag 'upstream/2.0.9'
refresh patches
- d/copyright: updated years and added new files
s/UNRELEASED/unstable/
Merge tag 'upstream/2.0.10'
d/changelog: new upstrem version
d/docs: no need in NEWS as it is outdated - tophat versions 0.7-1.0
d/watch: new url
Merge tag 'upstream/2.0.12+dfsg'
d/changelog: new upstream release
d/patches: added patch from Manuel Holtgrewe resolving #733352
d/patches: updated debian/patches/fix_includes_path.patch
d/watch: use dversionmangle to hide +dfsg suffix
d/changelog: upload to unstable
d/copyright: remove sections for not existing files
debian/patches/hardening4samtols.patch: add hardening flags for
upload to unstable
Merge tag 'upstream/2.0.14+dfsg'
d/changelog: new upstream version
d/changelog: upload to unstable
Andreas Tille (37):
Add patch for #660309 provided by Peter Green
Fix bug in changelog
Added myself as bug reviewer
Mention author of patch in changelog
Add name to e-mail in upstream contact
Added references in debian/upstream file
Upload to unstable
BibTeX conform author syntax
Fix bashism in shell script. UNTESTED - PLEASE TEST
Debhelper 9; upload to unstable
Add some manpages via help2man - please follow these examples and add more
Prevent error message piped into manpage
UPdate contact
New upstream version
Merge tag 'upstream/2.0.11'
cme fix dpkg-control
New upstream version fixes Build problem
iMake sure boos libraries will be found
Some more help2man invocations
It was not really obvious that debian/get-orig-source was used (not mentioned in debian/rules) - do this now in a canonical way using Files-Excluded
Merge tag 'upstream/2.0.11+dfsg'
Once the internal SeqAn copy is removed the package is remaining failing to build against seqan-1.4
Commit Diane's patch
Fix syntax of uscan call
Remove redundant enforcement of xz compression
Reupload to trigger rebuild on all architectures since seqan-dev is now available everywhere
Versioned Build-Depends: seqan-dev (>= 1.4)
Use "Architecture: amd64 kfreebsd-amd64" since bowtie and bowtie2 are only available on amd64
cme fix dpkg-control
fix "empty-short-license-in-dep5-copyright" lintian warnings
Merge tag 'upstream/2.0.13'
New upstream version
Merge tag 'upstream/2.0.13+dfsg'
Adpated patches. PLEASE VERIFY - samtools copy looks suspicious!!!!
Add repacksuffix to debian/watch
Merge tag 'upstream/2.1.0+dfsg'
New upstream version
Carlos Borroto (16):
Imported Debian patch 1.3.1-1ppa1~lucid1
Merge commit 'upstream/1.4.0'
New upstream release, patches updated
adding patch to fix undefined reference error
refreshs debian/patches/fix_undefined_reference.patch to include
adds debian/watch file
Merge commit 'upstream/1.4.1'
removes debian/patches/fix_undefined_reference.patch no longer needed in new upstream
updated changelog for new upstream
adds bowtie as a dependency and recommends cufflinks
Make cufflinks a suggests and not a recommends
Merge tag 'upstream/2.0.4'
patch bashism_in_shell_script refreshed
updated changelog to version 2.0.4
Merge tag 'upstream/2.0.6'
updated changelog to 2.0.6
Charles Plessy (13):
Corrected VCS URL.
Minor description changes.
Recommend bowtie.
Normalised with config-edit --application dpkg-copyright.
Documented SeqAn and m4 macros.
Merged bam2samtools and fix_includes_path.patch (same purpose).
Build-depend only on python.
Tighten build-dependancy on sequan-dev
Uploading 1.4.1-1.
YAML syntax correction
tophat (2.0.6-1) unstable; urgency=low
Added a configuration file for git-buildpackage.
tophat (2.1.0+dfsg-1~bpo8+1) jessie-backports; urgency=medium
James McCoy (1):
Move debian/upstream to debian/upstream/metadata
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