[med-svn] [artfastqgenerator] 01/01: Add autopkgtest

[Andreas Tille]

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tille pushed a commit to branch master
in repository artfastqgenerator.

commit 809bee6bdfb0f6022a3e0605c62e26ed3888ebd6
Author: Andreas Tille <tille at debian.org>
Date:   Tue Feb 16 16:54:17 2016 +0100

    Add autopkgtest
---
 debian/README.test            |  9 +++++++++
 debian/artfastqgenerator.docs |  2 ++
 debian/rules                  |  1 +
 debian/tests/control          |  3 +++
 debian/tests/run-unit-test    | 13 +++++++++++++
 5 files changed, 28 insertions(+)

diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..dfaf629
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,9 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you need to install the package
+artfastqgenerator-examples and than you can run
+
+   sh run-unit-test
+
+in this directory.
diff --git a/debian/artfastqgenerator.docs b/debian/artfastqgenerator.docs
index 71dfd5b..4922f97 100644
--- a/debian/artfastqgenerator.docs
+++ b/debian/artfastqgenerator.docs
@@ -1 +1,3 @@
 README.txt
+debian/README.test
+debian/tests/run-unit-test
diff --git a/debian/rules b/debian/rules
index cba25ba..67906a6 100755
--- a/debian/rules
+++ b/debian/rules
@@ -13,6 +13,7 @@ override_dh_auto_build:
 
 override_dh_auto_test:
 	java -jar $(DEBPKGNAME).jar -R miniReference.fasta -O C1 -S ">1" -E ">" -URQS true -SE true -F1 test1.fastq -F2 test2.fastq
+	rm C1.1.fastq C1.2.fastq
 
 get-orig-source:
 	. debian/get-orig-source
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..4f0dea7
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, artfastqgenerator-examples
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..12d4252
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,13 @@
+#!/bin/sh -e
+
+pkg=artfastqgenerator
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp -a /usr/share/doc/artfastqgenerator/examples/* .
+find . -name "*.gz" -exec gunzip \{\} \;
+$pkg -R miniReference.fasta -O C1 -S ">1" -E ">" -URQS true -SE true -F1 test1.fastq -F2 test2.fastq
+if [ -e C1.1.fastq -a -e C1.2.fastq ] ; then
+    echo "Test seems to be OK"
+fi

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