[med-svn] r21432 - in trunk/packages/staden/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2016-02-21 06:30:14 +0000 (Sun, 21 Feb 2016)
New Revision: 21432

Added:
   trunk/packages/staden/trunk/debian/patches/spelling.patch
Modified:
   trunk/packages/staden/trunk/debian/changelog
   trunk/packages/staden/trunk/debian/patches/series
Log:
Fix some spelling issues


Modified: trunk/packages/staden/trunk/debian/changelog
===================================================================
--- trunk/packages/staden/trunk/debian/changelog	2016-02-21 06:25:19 UTC (rev 21431)
+++ trunk/packages/staden/trunk/debian/changelog	2016-02-21 06:30:14 UTC (rev 21432)
@@ -5,6 +5,7 @@
   * cme fix dpkg-control
   * move bash completions from etc to usr/share/bash-completion/completions
   * fix names of desktop files to match names of GUI executables
+  * fix some spelling issues
 
  -- Andreas Tille <tille at debian.org>  Sat, 20 Feb 2016 20:06:23 +0100
 

Modified: trunk/packages/staden/trunk/debian/patches/series
===================================================================
--- trunk/packages/staden/trunk/debian/patches/series	2016-02-21 06:25:19 UTC (rev 21431)
+++ trunk/packages/staden/trunk/debian/patches/series	2016-02-21 06:30:14 UTC (rev 21432)
@@ -6,3 +6,4 @@
 fix_awk.patch
 # delete_rpath_from_configure.patch
 enable_setting_stadenroot.patch
+spelling.patch

Added: trunk/packages/staden/trunk/debian/patches/spelling.patch
===================================================================
--- trunk/packages/staden/trunk/debian/patches/spelling.patch	                        (rev 0)
+++ trunk/packages/staden/trunk/debian/patches/spelling.patch	2016-02-21 06:30:14 UTC (rev 21432)
@@ -0,0 +1,57 @@
+Description: fix some spelling issues
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Sat, 20 Feb 2016 20:06:23 +0100
+
+--- a/gap5/tg_index.c
++++ b/gap5/tg_index.c
+@@ -49,7 +49,7 @@
+ 
+ void usage(void) {
+     fprintf(stderr, "Usage: g_index [options] data_file ...\n");
+-    fprintf(stderr, "      -o output            Specify ouput filename (g_db)\n");
++    fprintf(stderr, "      -o output            Specify output filename (g_db)\n");
+     fprintf(stderr, "\n");
+     fprintf(stderr, "      -m                   Input is MAQ format\n");
+     fprintf(stderr, "      -M                   Input is MAQ-long format\n");
+--- a/copy_reads/copy_reads.c
++++ b/copy_reads/copy_reads.c
+@@ -478,7 +478,7 @@ int check_cons_match(char *seq1,
+ 
+     if (mism > max_mismatch) {
+ 
+-	vmessage("\nLocal mismatch of %f found at postion %d over a window length of %d\n",
++	vmessage("\nLocal mismatch of %f found at position %d over a window length of %d\n",
+ 		 (float)mism / win_len * 100, i-win_len+1, win_len);
+ 	vmessage("Aborting this match\n\n");
+ 	return -1;
+@@ -490,7 +490,7 @@ int check_cons_match(char *seq1,
+ 	    mism += !same_char(seq1[i], seq2[j]);
+ 	}
+ 	if (mism > max_mismatch) {
+-	    vmessage("\nLocal mismatch of %f found at postion %d over a window length of %d\n",
++	    vmessage("\nLocal mismatch of %f found at position %d over a window length of %d\n",
+ 		     (float)mism / win_len * 100, i-win_len, win_len);
+ 	    vmessage("Aborting this match\n\n");
+ 	    return -1;
+--- a/primer3/src/ntdpal_main.c
++++ b/primer3/src/ntdpal_main.c
+@@ -33,7 +33,7 @@ main(argc, argv)
+       "    creating or widening a gap respectively (<gval> and <lval> are\n"
+       "    subtracted from the output score).\n"
+       "-a causes the scoring matrix to be modified by dpal_set_ambiguity_codes.\n"
+-      "-e causes the end postion of the alignment in both sequences to\n"
++      "-e causes the end position of the alignment in both sequences to\n"
+       "   be printed.  Do not confuse with the 'e' <mode>\n"
+       "-h use a different scoring matrix: G and C matches = 3, A and T = 2\n"
+       "-p causes the alignment to be displayed.\n"
+--- a/primer3/src/primer3_lib.c
++++ b/primer3/src/primer3_lib.c
+@@ -2888,7 +2888,7 @@ const primer_args *pa;
+  *  
+  * Note: we don't insist that the start codon be ATG, since in some
+  * cases the caller will not have the full sequence in 's', nor even
+- * know the postion of the start codon relative to s.
++ * know the position of the start codon relative to s.
+  */
+ static int
+ find_stop_codon(const char *s, int start, int direction)