[med-svn] r21436 - in trunk/packages/staden-io-lib/trunk/debian: . man1
Andreas Tille
tille at moszumanska.debian.org
Sun Feb 21 08:12:52 UTC 2016
Author: tille
Date: 2016-02-21 08:12:51 +0000 (Sun, 21 Feb 2016)
New Revision: 21436
Added:
trunk/packages/staden-io-lib/trunk/debian/man1/
trunk/packages/staden-io-lib/trunk/debian/man1/srf_dump_all.1
trunk/packages/staden-io-lib/trunk/debian/man1/srf_filter.1
Removed:
trunk/packages/staden-io-lib/trunk/debian/srf_dump_all.1
trunk/packages/staden-io-lib/trunk/debian/srf_filter.1
Modified:
trunk/packages/staden-io-lib/trunk/debian/changelog
trunk/packages/staden-io-lib/trunk/debian/staden-io-lib-utils.manpages
Log:
Assemble debian created manpages in debian/man1
Modified: trunk/packages/staden-io-lib/trunk/debian/changelog
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/changelog 2016-02-21 07:26:03 UTC (rev 21435)
+++ trunk/packages/staden-io-lib/trunk/debian/changelog 2016-02-21 08:12:51 UTC (rev 21436)
@@ -1,6 +1,7 @@
staden-io-lib (1.14.6-3) UNRELEASED; urgency=medium
* Add lintian-overrides for scripts in example package
+ * Assemble debian created manpages in debian/man1
-- Andreas Tille <tille at debian.org> Sun, 21 Feb 2016 08:25:18 +0100
Copied: trunk/packages/staden-io-lib/trunk/debian/man1/srf_dump_all.1 (from rev 21435, trunk/packages/staden-io-lib/trunk/debian/srf_dump_all.1)
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/man1/srf_dump_all.1 (rev 0)
+++ trunk/packages/staden-io-lib/trunk/debian/man1/srf_dump_all.1 2016-02-21 08:12:51 UTC (rev 21436)
@@ -0,0 +1,58 @@
+.\" Originally generated via:
+.\" help2man --no-discard-stderr --no-info --name='dump data of SRF files' --version-string='1.13.2' srf_dump_all > srf_dump_all.1
+.TH SRF_DUMP_ALL "1" "August 2013" "srf_dump_all 1.13.2" "User Commands"
+.SH NAME
+srf_dump_all \- dump data of SRF files
+.SH SYNOPSIS
+.B srf_dump_all
+[\fI-c chunk_types\fR] [\fI-d destination_types\fR] [\fI-f read_filter\fR] [\fI-n\fR] [\fI-o\fR] [\fI-t type_of_output\fR] \fIarchive_name\fR
+.SH OPTIONS
+.HP
+\fB\-c\fR chunk_types
+.IP
+Chunk types to output given as a comma delimited list of types.
+The following types are allowed: "all", "seq", "prb",
+"int", "nse", "sig2".
+The default is "all".
+.HP
+\fB\-d\fR destination_types
+.IP
+Distinations to output to.
+The following types are allowed: "console", "file", "none".
+The default is "console". Console and file can be together,
+but none is exclusive.
+.HP
+\fB\-f\fR read_filter
+.TP
+The filter to apply to reads in the archive.
+If reads match the
+.IP
+filter they are dumped.
+The filter takes the form of <name>=<value>, where <name> can be
+"read", "prefix", "file".
+If the <name> is "read" the value is represents the name of a
+read to dump. Only the matching read will be dumped.
+If the <name> is "prefix" the value is represents the prefix of
+the name of the reads to dump. Only the matching reads will be
+dumped.
+If the <name> is "file" the value is a file name where any
+number of "read" and "prefix" name value pairs can be included,
+one per line.
+The default is no filter, which means all reads are dumped.
+.TP
+\fB\-n\fR
+Output the total number of reads at the bottom.
+.TP
+\fB\-o\fR
+Output the total number of reads only. Nothing else is output.
+.HP
+\fB\-t\fR type_of_output
+.TP
+Type of output.
+Only one value allowed.
+.IP
+Currently "text" and "solexa" is supported.
+The default is "text".
+.TP
+\fB\-v\fR
+Print verbose messages.
Copied: trunk/packages/staden-io-lib/trunk/debian/man1/srf_filter.1 (from rev 21435, trunk/packages/staden-io-lib/trunk/debian/srf_filter.1)
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/man1/srf_filter.1 (rev 0)
+++ trunk/packages/staden-io-lib/trunk/debian/man1/srf_filter.1 2016-02-21 08:12:51 UTC (rev 21436)
@@ -0,0 +1,52 @@
+.\" Originally generated via:
+.\" help2man --no-discard-stderr --no-info --help-option='""' --name='filter SRF files for various purposes' --version-string='1.13.2' srf_filter > srf_filter.1
+.TH SRF_FILTER "1" "August 2013" "srf_filter 1.13.2" "User Commands"
+.SH NAME
+srf_filter \- filter SRF files for various purposes
+.SH SYNOPSIS
+.B srf_filter
+[\fI-c chunk_types\fR] [\fI-f read_filter\fR] [\fI-C\fR] [\fI-o\fR] [\fI-v\fR] \fIinput(s) output\fR
+.SH OPTIONS
+.HP
+\fB\-c\fR chunk_types
+.IP
+Chunk types to output given as a comma delimited list of types.
+The following types are allowed: "ALL", "BASE", "CNF1", "CNF4"
+"SAMP", "SMP4".
+The default is "ALL".
+.HP
+\fB\-m\fR mdata_types
+.IP
+SAMP/SMP4 mdata types to output given as a comma delimited list of types.
+The following types are allowed: "ALL", "PROC", "SLXI", "SLXN"
+"0FAM", "1CY3", "2TXR", "3CY5".
+The default is "ALL".
+.HP
+\fB\-f\fR read_filter
+.TP
+The filter to apply to reads in the archive.
+If reads match the
+.IP
+filter they are dumped.
+The filter takes the form of <name>=<value>, where <name> can be
+"read", "prefix", "file".
+If the <name> is "read" the value is represents the name of a
+read to dump. Only the matching read will be dumped.
+If the <name> is "prefix" the value is represents the prefix of
+the name of the reads to dump. Only the matching reads will be
+dumped.
+If the <name> is "file" the value is a file name where any
+number of "read" and "prefix" name value pairs can be included,
+one per line.
+The default is no filter, which means all reads are dumped.
+.TP
+\fB\-b\fR
+exclude bad reads using readsFlags bitmask in data block header.
+.TP
+\fB\-2\fR cyc
+use this option to add a Illumina\-style REGN chunk.
+.TP
+\fB\-v\fR
+Print verbose messages.
+.PP
+Use '\-' for the input or output name to read from stdin or write to stdout.
Deleted: trunk/packages/staden-io-lib/trunk/debian/srf_dump_all.1
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/srf_dump_all.1 2016-02-21 07:26:03 UTC (rev 21435)
+++ trunk/packages/staden-io-lib/trunk/debian/srf_dump_all.1 2016-02-21 08:12:51 UTC (rev 21436)
@@ -1,58 +0,0 @@
-.\" Originally generated via:
-.\" help2man --no-discard-stderr --no-info --name='dump data of SRF files' --version-string='1.13.2' srf_dump_all > srf_dump_all.1
-.TH SRF_DUMP_ALL "1" "August 2013" "srf_dump_all 1.13.2" "User Commands"
-.SH NAME
-srf_dump_all \- dump data of SRF files
-.SH SYNOPSIS
-.B srf_dump_all
-[\fI-c chunk_types\fR] [\fI-d destination_types\fR] [\fI-f read_filter\fR] [\fI-n\fR] [\fI-o\fR] [\fI-t type_of_output\fR] \fIarchive_name\fR
-.SH OPTIONS
-.HP
-\fB\-c\fR chunk_types
-.IP
-Chunk types to output given as a comma delimited list of types.
-The following types are allowed: "all", "seq", "prb",
-"int", "nse", "sig2".
-The default is "all".
-.HP
-\fB\-d\fR destination_types
-.IP
-Distinations to output to.
-The following types are allowed: "console", "file", "none".
-The default is "console". Console and file can be together,
-but none is exclusive.
-.HP
-\fB\-f\fR read_filter
-.TP
-The filter to apply to reads in the archive.
-If reads match the
-.IP
-filter they are dumped.
-The filter takes the form of <name>=<value>, where <name> can be
-"read", "prefix", "file".
-If the <name> is "read" the value is represents the name of a
-read to dump. Only the matching read will be dumped.
-If the <name> is "prefix" the value is represents the prefix of
-the name of the reads to dump. Only the matching reads will be
-dumped.
-If the <name> is "file" the value is a file name where any
-number of "read" and "prefix" name value pairs can be included,
-one per line.
-The default is no filter, which means all reads are dumped.
-.TP
-\fB\-n\fR
-Output the total number of reads at the bottom.
-.TP
-\fB\-o\fR
-Output the total number of reads only. Nothing else is output.
-.HP
-\fB\-t\fR type_of_output
-.TP
-Type of output.
-Only one value allowed.
-.IP
-Currently "text" and "solexa" is supported.
-The default is "text".
-.TP
-\fB\-v\fR
-Print verbose messages.
Deleted: trunk/packages/staden-io-lib/trunk/debian/srf_filter.1
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/srf_filter.1 2016-02-21 07:26:03 UTC (rev 21435)
+++ trunk/packages/staden-io-lib/trunk/debian/srf_filter.1 2016-02-21 08:12:51 UTC (rev 21436)
@@ -1,52 +0,0 @@
-.\" Originally generated via:
-.\" help2man --no-discard-stderr --no-info --help-option='""' --name='filter SRF files for various purposes' --version-string='1.13.2' srf_filter > srf_filter.1
-.TH SRF_FILTER "1" "August 2013" "srf_filter 1.13.2" "User Commands"
-.SH NAME
-srf_filter \- filter SRF files for various purposes
-.SH SYNOPSIS
-.B srf_filter
-[\fI-c chunk_types\fR] [\fI-f read_filter\fR] [\fI-C\fR] [\fI-o\fR] [\fI-v\fR] \fIinput(s) output\fR
-.SH OPTIONS
-.HP
-\fB\-c\fR chunk_types
-.IP
-Chunk types to output given as a comma delimited list of types.
-The following types are allowed: "ALL", "BASE", "CNF1", "CNF4"
-"SAMP", "SMP4".
-The default is "ALL".
-.HP
-\fB\-m\fR mdata_types
-.IP
-SAMP/SMP4 mdata types to output given as a comma delimited list of types.
-The following types are allowed: "ALL", "PROC", "SLXI", "SLXN"
-"0FAM", "1CY3", "2TXR", "3CY5".
-The default is "ALL".
-.HP
-\fB\-f\fR read_filter
-.TP
-The filter to apply to reads in the archive.
-If reads match the
-.IP
-filter they are dumped.
-The filter takes the form of <name>=<value>, where <name> can be
-"read", "prefix", "file".
-If the <name> is "read" the value is represents the name of a
-read to dump. Only the matching read will be dumped.
-If the <name> is "prefix" the value is represents the prefix of
-the name of the reads to dump. Only the matching reads will be
-dumped.
-If the <name> is "file" the value is a file name where any
-number of "read" and "prefix" name value pairs can be included,
-one per line.
-The default is no filter, which means all reads are dumped.
-.TP
-\fB\-b\fR
-exclude bad reads using readsFlags bitmask in data block header.
-.TP
-\fB\-2\fR cyc
-use this option to add a Illumina\-style REGN chunk.
-.TP
-\fB\-v\fR
-Print verbose messages.
-.PP
-Use '\-' for the input or output name to read from stdin or write to stdout.
Modified: trunk/packages/staden-io-lib/trunk/debian/staden-io-lib-utils.manpages
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/staden-io-lib-utils.manpages 2016-02-21 07:26:03 UTC (rev 21435)
+++ trunk/packages/staden-io-lib/trunk/debian/staden-io-lib-utils.manpages 2016-02-21 08:12:51 UTC (rev 21436)
@@ -1,2 +1,2 @@
man/man1/*1
-debian/*.1
+debian/man1/*.1
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