[med-svn] [spades] annotated tag debian/3.6.2+dfsg-2 created (now 63eff84)

[Sascha Steinbiss]

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sascha-guest pushed a change to annotated tag debian/3.6.2+dfsg-2
in repository spades.

        at  63eff84   (tag)
   tagging  29b1444dfacf2c7f97aaa2e3ec43d6a277de91c6 (commit)
 tagged by  Sascha Steinbiss
        on  Mon Feb 22 11:32:06 2016 +0000

- Log -----------------------------------------------------------------
spades Debian release 3.6.2+dfsg-2

Afif Elghraoui (11):
      initial upstream branch
      Merge branch 'upstream'
      Imported Upstream version 3.6.2+dfsg
      Imported Upstream version 3.6.2+dfsg
      Merge tag 'upstream/3.6.2+dfsg'
      Update changelog for new release
      Refresh patches
      Join the uploaders list
      Set Vcs fields to point to git
      Update comment regarding ConsensusCore Debian package
      Add missing copyright notices

Andreas Tille (19):
      Inject initial (not yet working) packaging for spades
      Thanks to gregor hermann for the hint to the watch file
      Files layout is a bit hackish but works for the first tests
      Do not install license copies
      Add help2man based manpages
      Do not install code copies of python-yaml and python-joblib and rather use Debian packaged code
      Deal with some code copies, document others (more to come)
      Add upstream contact
      Some steps forward to adapt to latest version 3.5.  There is a lot work remaining.  For the moment it does not even build in pbuilder since it depends on a cmake control file in a not yet released bamtools package (I'll see whether this can be avoided)
      Enable pbuilder builds
      Better organising of patches
      Fix spacing in patches
      Try to create patches acceptable by upstream
      Get something that somehow builds and passes the test.  Keep on with the replacement of code copies
      Use debian's own boots library
      Strange error in test suite is caused by using Debian packaged bamtools - at least when linked this way.
      led to exclude yaml-cpp :-(
      Remove redundant chunks from changelog
      Make sure the tarball will be xz compressed after repackaging

Gert Wollny (1):
      src/io/logger_impl.cpp: add define to keep jemalloc function names

James McCoy (1):
      Move debian/upstream to debian/upstream/metadata

Sascha Steinbiss (45):
      update patches
      build code in single thread
      use fully qualified config paths
      re-enable tests
      update changelog
      clean up uploaders
      use secure Vcs-Git
      fix whitespace
      add Cmake hardening flags
      add patch headers
      add patches
      do not remove .orig files
      add more spelling situations
      check licenses in d/copyright
      overhaul licenses
      fix more spelling issues
      add myself to uploaders
      add ITP bug#, dch -r
      add overrides
      add ext/ licenses
      add more licenses
      remove md5.h
      Imported Upstream version 3.6.2+dfsg
      Merge tag 'upstream/3.6.2+dfsg'
      patch spades_init.py to look in correct paths
      truspades needs SeqIO
      address Lintian complaints in d/copyrights
      make wrapper flexible with extensions
      use wrapper
      fix Biopython imports
      require Biopython where needed
      remove Biopython dep again
      link BWA to expected place
      add tests for dipSPAdes
      remove unnecessary patch
      extend patches
      add autopkgtest
      add man page sources
      build manpages
      remove old manpages
      fix spelling
      bump Standards-Version
      use Debian provided jemalloc
      update changelog
      dch -r

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