[med-svn] [spades] 04/07: Merge tag 'upstream/3.7.0+dfsg'
Sascha Steinbiss
sascha at steinbiss.name
Wed Feb 24 22:08:42 UTC 2016
This is an automated email from the git hooks/post-receive script.
sascha-guest pushed a commit to branch master
in repository spades.
commit cc8a41fdb15fa17891d7ae819481ed5bd321f37b
Merge: 7fb6cc5 31a083f
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date: Wed Feb 24 21:28:36 2016 +0000
Merge tag 'upstream/3.7.0+dfsg'
Upstream version 3.7.0+dfsg
ext/include/jemalloc/internal/arena.h | 975 --------
ext/include/jemalloc/internal/atomic.h | 304 ---
ext/include/jemalloc/internal/base.h | 26 -
ext/include/jemalloc/internal/bitmap.h | 184 --
ext/include/jemalloc/internal/chunk.h | 63 -
ext/include/jemalloc/internal/chunk_dss.h | 38 -
ext/include/jemalloc/internal/chunk_mmap.h | 22 -
ext/include/jemalloc/internal/ckh.h | 90 -
ext/include/jemalloc/internal/ctl.h | 117 -
ext/include/jemalloc/internal/extent.h | 46 -
ext/include/jemalloc/internal/hash.h | 70 -
ext/include/jemalloc/internal/huge.h | 40 -
ext/include/jemalloc/internal/jemalloc_internal.h | 1010 ---------
ext/include/jemalloc/internal/mb.h | 115 -
ext/include/jemalloc/internal/mutex.h | 99 -
ext/include/jemalloc/internal/private_namespace.h | 367 ---
ext/include/jemalloc/internal/prng.h | 60 -
ext/include/jemalloc/internal/prof.h | 581 -----
ext/include/jemalloc/internal/ql.h | 83 -
ext/include/jemalloc/internal/qr.h | 67 -
ext/include/jemalloc/internal/quarantine.h | 24 -
ext/include/jemalloc/internal/rb.h | 973 --------
ext/include/jemalloc/internal/rtree.h | 164 --
ext/include/jemalloc/internal/size_classes.h | 721 ------
ext/include/jemalloc/internal/size_classes.sh | 122 -
ext/include/jemalloc/internal/stats.h | 186 --
ext/include/jemalloc/internal/tcache.h | 440 ----
ext/include/jemalloc/internal/tsd.h | 397 ----
ext/include/jemalloc/internal/util.h | 160 --
ext/include/jemalloc/jemalloc.h.in | 157 --
ext/include/jemalloc/jemalloc_defs.h.in | 264 ---
ext/src/jemalloc/CMakeLists.txt | 213 --
ext/src/jemalloc/COPYING | 27 -
ext/src/jemalloc/arena.c | 2376 --------------------
ext/src/jemalloc/atomic.c | 2 -
ext/src/jemalloc/base.c | 139 --
ext/src/jemalloc/bitmap.c | 90 -
ext/src/jemalloc/chunk.c | 381 ----
ext/src/jemalloc/chunk_dss.c | 197 --
ext/src/jemalloc/chunk_mmap.c | 210 --
ext/src/jemalloc/ckh.c | 609 -----
ext/src/jemalloc/cmake/CheckPageSize.c.in | 18 -
ext/src/jemalloc/ctl.c | 1674 --------------
ext/src/jemalloc/extent.c | 39 -
ext/src/jemalloc/hash.c | 2 -
ext/src/jemalloc/huge.c | 313 ---
ext/src/jemalloc/intercept.inl | 67 -
ext/src/jemalloc/jemalloc.c | 1848 ---------------
ext/src/jemalloc/mb.c | 2 -
ext/src/jemalloc/mutex.c | 149 --
ext/src/jemalloc/prof.c | 1315 -----------
ext/src/jemalloc/quarantine.c | 210 --
ext/src/jemalloc/rtree.c | 67 -
ext/src/jemalloc/stats.c | 551 -----
ext/src/jemalloc/tcache.c | 474 ----
ext/src/jemalloc/tsd.c | 107 -
ext/src/jemalloc/util.c | 641 ------
ext/src/jemalloc/zone.c | 257 ---
.../__pycache__/corrector_logic.cpython-34.pyc | Bin 2257 -> 0 bytes
.../__pycache__/dipspades_logic.cpython-34.pyc | Bin 9800 -> 0 bytes
.../__pycache__/dipspades_logic.cpython-35.pyc | Bin 9746 -> 0 bytes
.../__pycache__/hammer_logic.cpython-33.pyc | Bin 6876 -> 0 bytes
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.../__pycache__/options_storage.cpython-33.pyc | Bin 19269 -> 0 bytes
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.../__pycache__/process_cfg.cpython-33.pyc | Bin 8923 -> 0 bytes
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.../__pycache__/spades_logic.cpython-33.pyc | Bin 15617 -> 0 bytes
.../__pycache__/spades_logic.cpython-34.pyc | Bin 11542 -> 0 bytes
.../__pycache__/spades_logic.cpython-35.pyc | Bin 11366 -> 0 bytes
.../__pycache__/support.cpython-33.pyc | Bin 39538 -> 0 bytes
.../__pycache__/support.cpython-34.pyc | Bin 26771 -> 0 bytes
.../__pycache__/support.cpython-35.pyc | Bin 26508 -> 0 bytes
src/spades_pipeline/common/SeqIO.pyc | Bin 7634 -> 0 bytes
.../common/__pycache__/SeqIO.cpython-33.pyc | Bin 9245 -> 0 bytes
.../common/__pycache__/SeqIO.cpython-34.pyc | Bin 5553 -> 0 bytes
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.../common/__pycache__/alignment.cpython-33.pyc | Bin 3826 -> 0 bytes
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.../common/__pycache__/alignment.cpython-35.pyc | Bin 2673 -> 0 bytes
.../__pycache__/parallel_launcher.cpython-34.pyc | Bin 3014 -> 0 bytes
.../__pycache__/parallel_launcher.cpython-35.pyc | Bin 3008 -> 0 bytes
.../common/__pycache__/sam_parser.cpython-33.pyc | Bin 15134 -> 0 bytes
.../common/__pycache__/sam_parser.cpython-34.pyc | Bin 9071 -> 0 bytes
.../common/__pycache__/sam_parser.cpython-35.pyc | Bin 9062 -> 0 bytes
src/spades_pipeline/common/alignment.pyc | Bin 3118 -> 0 bytes
src/spades_pipeline/common/parallel_launcher.pyc | Bin 4205 -> 0 bytes
src/spades_pipeline/common/sam_parser.pyc | Bin 11960 -> 0 bytes
.../__pycache__/barcode_extraction.cpython-34.pyc | Bin 5268 -> 0 bytes
.../__pycache__/barcode_extraction.cpython-35.pyc | Bin 5250 -> 0 bytes
.../__pycache__/break_by_coverage.cpython-33.pyc | Bin 9213 -> 0 bytes
.../__pycache__/break_by_coverage.cpython-34.pyc | Bin 6014 -> 0 bytes
.../__pycache__/break_by_coverage.cpython-35.pyc | Bin 5969 -> 0 bytes
.../__pycache__/generate_quality.cpython-33.pyc | Bin 3155 -> 0 bytes
.../__pycache__/generate_quality.cpython-34.pyc | Bin 2126 -> 0 bytes
.../__pycache__/generate_quality.cpython-35.pyc | Bin 2117 -> 0 bytes
.../__pycache__/id_generation.cpython-34.pyc | Bin 2443 -> 0 bytes
.../__pycache__/id_generation.cpython-35.pyc | Bin 2437 -> 0 bytes
.../__pycache__/launch_options.cpython-34.pyc | Bin 4470 -> 0 bytes
.../__pycache__/launch_options.cpython-35.pyc | Bin 4438 -> 0 bytes
.../moleculo_filter_contigs.cpython-33.pyc | Bin 2792 -> 0 bytes
.../moleculo_filter_contigs.cpython-34.pyc | Bin 1689 -> 0 bytes
.../moleculo_filter_contigs.cpython-35.pyc | Bin 1677 -> 0 bytes
.../moleculo_postprocessing.cpython-33.pyc | Bin 3213 -> 0 bytes
.../moleculo_postprocessing.cpython-34.pyc | Bin 2218 -> 0 bytes
.../moleculo_postprocessing.cpython-35.pyc | Bin 2212 -> 0 bytes
.../reference_construction.cpython-34.pyc | Bin 7113 -> 0 bytes
.../reference_construction.cpython-35.pyc | Bin 7080 -> 0 bytes
.../__pycache__/string_dist_utils.cpython-34.pyc | Bin 1904 -> 0 bytes
.../__pycache__/string_dist_utils.cpython-35.pyc | Bin 1904 -> 0 bytes
.../truspades/barcode_extraction.pyc | Bin 6460 -> 0 bytes
.../truspades/break_by_coverage.pyc | Bin 7561 -> 0 bytes
src/spades_pipeline/truspades/generate_quality.pyc | Bin 2396 -> 0 bytes
src/spades_pipeline/truspades/id_generation.pyc | Bin 3083 -> 0 bytes
src/spades_pipeline/truspades/launch_options.pyc | Bin 5075 -> 0 bytes
.../truspades/moleculo_filter_contigs.pyc | Bin 2288 -> 0 bytes
.../truspades/moleculo_postprocessing.pyc | Bin 2568 -> 0 bytes
.../truspades/reference_construction.pyc | Bin 8701 -> 0 bytes
.../truspades/string_dist_utils.pyc | Bin 2474 -> 0 bytes
122 files changed, 19943 deletions(-)
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