[med-svn] [reapr] 04/11: fix spelling

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

sascha-guest pushed a commit to branch master
in repository reapr.

commit 3493dbff620f2c98149613c646f97ddee1b2111f
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Thu Feb 25 10:49:45 2016 +0000

    fix spelling
---
 debian/man_src/reapr-break.1.ronn |  2 +-
 debian/patches/spelling           | 11 +++++++++++
 2 files changed, 12 insertions(+), 1 deletion(-)

diff --git a/debian/man_src/reapr-break.1.ronn b/debian/man_src/reapr-break.1.ronn
index b40baf8..6f7dbc1 100644
--- a/debian/man_src/reapr-break.1.ronn
+++ b/debian/man_src/reapr-break.1.ronn
@@ -12,7 +12,7 @@ reapr-break(1) -- make broken assembly via REAPR
 ## OPTIONS
 
 * `-a`:
-  Agressive breaking: break contigs at any FCD or low_frag error, as
+  Aggressive breaking: break contigs at any FCD or low_frag error, as
   opposed to the default of replacing with Ns. Contigs are broken at the
   midpoint of each error. Also see option `-t`. Incompatible with `-b`.
 
diff --git a/debian/patches/spelling b/debian/patches/spelling
index 2f08f6e..9a5977c 100644
--- a/debian/patches/spelling
+++ b/debian/patches/spelling
@@ -12,3 +12,14 @@ Forwarded: via email, 20160205
  where 'stats prefix' is output files prefix used when stats was run\n\n\
  Options:\n\n\
  -l <int>\n\tWindow length [insert_size / 2] (insert_size is taken to be\n\
+--- a/src/task_break.cpp
++++ b/src/task_break.cpp
+@@ -334,7 +334,7 @@
+     usage = "\
+ where 'errors.gff.gz' is the errors gff file made when running score.\n\n\
+ Options:\n\
+--a\n\tAgressive breaking: break contigs at any FCD or low_frag error, as\n\
++-a\n\tAggressive breaking: break contigs at any FCD or low_frag error, as\n\
+ \topposed to the default of replacing with Ns. Contigs are broken at the\n\
+ \tmidpoint of each error. Also see option -t. Incompatible with -b\n\
+ -b\n\tIgnore FCD and low fragment coverage errors that do not contain\n\

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/reapr.git