[med-svn] [pbsuite] 01/12: Fix invalid paths in shebang lines

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository pbsuite.

commit cd9ba776834eb071eee83950d2c39185b3cea9ed
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Fri Feb 26 22:22:51 2016 -0800

    Fix invalid paths in shebang lines
---
 debian/patches/fix-shebang-lines.patch | 16 ++++++++++++++++
 debian/patches/series                  |  1 +
 2 files changed, 17 insertions(+)

diff --git a/debian/patches/fix-shebang-lines.patch b/debian/patches/fix-shebang-lines.patch
new file mode 100644
index 0000000..c3a475d
--- /dev/null
+++ b/debian/patches/fix-shebang-lines.patch
@@ -0,0 +1,16 @@
+--- pbsuite.orig/pbsuite/utils/quickN50.py
++++ pbsuite/pbsuite/utils/quickN50.py
+@@ -1,4 +1,4 @@
+-#!/hgsc_software/python/python-2.6/bin/python
++#!/usr/bin/python
+ import sys, math
+ 
+ def getStats(seqLengths):
+--- pbsuite.orig/pbsuite/banana/chunkyBlasr.py
++++ pbsuite/pbsuite/banana/chunkyBlasr.py
+@@ -1,4 +1,4 @@
+-#!/usr/env/bin python
++#!/usr/bin/python
+ 
+ import sys, os, glob, subprocess, logging
+ from string import Template
diff --git a/debian/patches/series b/debian/patches/series
index 689e1f6..3435ec7 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -2,3 +2,4 @@ fix-syntax-error.patch
 intervaltree-import-statement.patch
 rm-intervaltree-dependency.patch
 fix-example.patch
+fix-shebang-lines.patch

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