[med-svn] [kmer-tools] 05/13: Merge tag 'upstream/0_20150903+r2013'

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif-guest pushed a commit to branch master
in repository kmer-tools.

commit ecfd48913e104ef1a16801041ec21ee7ce579147
Merge: 3b02fbc f2f4f95
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Fri Jan 1 20:06:13 2016 -0800

    Merge tag 'upstream/0_20150903+r2013'
    
    Upstream version 0~20150903+r2013

 PACKAGING                                |  104 +
 configure.sh                             |    6 +-
 libutil/kazlib/Make.include              |   27 +
 libutil/kazlib/blast.pl                  |   33 +
 libutil/kazlib/dict.c                    | 1238 +++++++++
 libutil/kazlib/dict.h                    |  142 +
 libutil/kazlib/docs/CHANGES              |  290 +++
 libutil/kazlib/docs/MUST_READ            |   25 +
 libutil/kazlib/docs/README               |   66 +
 libutil/kazlib/docs/docs.ist             |    4 +
 libutil/kazlib/docs/docs.ltx             | 4155 ++++++++++++++++++++++++++++++
 libutil/kazlib/drivers/dict-main.c       |  300 +++
 libutil/kazlib/drivers/except-main.c     |   57 +
 libutil/kazlib/drivers/hash-main.c       |  187 ++
 libutil/kazlib/drivers/list-main.c       |  152 ++
 libutil/kazlib/drivers/sfx-main.c        |   41 +
 libutil/kazlib/except.c                  |  347 +++
 libutil/kazlib/except.h                  |  147 ++
 libutil/kazlib/hash.c                    |  837 ++++++
 libutil/kazlib/hash.h                    |  238 ++
 libutil/kazlib/list.c                    |  766 ++++++
 libutil/kazlib/list.h                    |  152 ++
 libutil/kazlib/sfx.c                     | 1138 ++++++++
 libutil/kazlib/sfx.h                     |   46 +
 meryl/args.C                             |    2 +-
 meryl/build.C                            |   70 +-
 meryl/estimate.C                         |  136 +-
 meryl/kmer-mask.C                        |  344 ++-
 meryl/mapMers.C                          |   26 +-
 meryl/meryl.H                            |    7 +-
 sim4dbutils/reportAlignmentDifferences.C |    2 +-
 31 files changed, 10810 insertions(+), 275 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/kmer-tools.git