[med-svn] [kmer-tools] branch upstream updated (af8304a -> f2f4f95)

[Afif Elghraoui]

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afif-guest pushed a change to branch upstream
in repository kmer-tools.

      from  af8304a   Imported Upstream version 0~20150520+2004
       new  f2f4f95   Imported Upstream version 0~20150903+r2013

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 PACKAGING                                |  104 +
 configure.sh                             |    6 +-
 libutil/kazlib/Make.include              |   27 +
 libutil/kazlib/blast.pl                  |   33 +
 libutil/kazlib/dict.c                    | 1238 +++++++++
 libutil/kazlib/dict.h                    |  142 +
 libutil/kazlib/docs/CHANGES              |  290 +++
 libutil/kazlib/docs/MUST_READ            |   25 +
 libutil/kazlib/docs/README               |   66 +
 libutil/kazlib/docs/docs.ist             |    4 +
 libutil/kazlib/docs/docs.ltx             | 4155 ++++++++++++++++++++++++++++++
 libutil/kazlib/drivers/dict-main.c       |  300 +++
 libutil/kazlib/drivers/except-main.c     |   57 +
 libutil/kazlib/drivers/hash-main.c       |  187 ++
 libutil/kazlib/drivers/list-main.c       |  152 ++
 libutil/kazlib/drivers/sfx-main.c        |   41 +
 libutil/kazlib/except.c                  |  347 +++
 libutil/kazlib/except.h                  |  147 ++
 libutil/kazlib/hash.c                    |  837 ++++++
 libutil/kazlib/hash.h                    |  238 ++
 libutil/kazlib/list.c                    |  766 ++++++
 libutil/kazlib/list.h                    |  152 ++
 libutil/kazlib/sfx.c                     | 1138 ++++++++
 libutil/kazlib/sfx.h                     |   46 +
 meryl/args.C                             |    2 +-
 meryl/build.C                            |   70 +-
 meryl/estimate.C                         |  136 +-
 meryl/kmer-mask.C                        |  344 ++-
 meryl/mapMers.C                          |   26 +-
 meryl/meryl.H                            |    7 +-
 sim4dbutils/reportAlignmentDifferences.C |    2 +-
 31 files changed, 10810 insertions(+), 275 deletions(-)
 create mode 100644 PACKAGING
 create mode 100644 libutil/kazlib/Make.include
 create mode 100755 libutil/kazlib/blast.pl
 create mode 100644 libutil/kazlib/dict.c
 create mode 100644 libutil/kazlib/dict.h
 create mode 100644 libutil/kazlib/docs/CHANGES
 create mode 100644 libutil/kazlib/docs/MUST_READ
 create mode 100644 libutil/kazlib/docs/README
 create mode 100644 libutil/kazlib/docs/docs.ist
 create mode 100644 libutil/kazlib/docs/docs.ltx
 create mode 100644 libutil/kazlib/drivers/dict-main.c
 create mode 100644 libutil/kazlib/drivers/except-main.c
 create mode 100644 libutil/kazlib/drivers/hash-main.c
 create mode 100644 libutil/kazlib/drivers/list-main.c
 create mode 100644 libutil/kazlib/drivers/sfx-main.c
 create mode 100644 libutil/kazlib/except.c
 create mode 100644 libutil/kazlib/except.h
 create mode 100644 libutil/kazlib/hash.c
 create mode 100644 libutil/kazlib/hash.h
 create mode 100644 libutil/kazlib/list.c
 create mode 100644 libutil/kazlib/list.h
 create mode 100644 libutil/kazlib/sfx.c
 create mode 100644 libutil/kazlib/sfx.h

-- 
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