[med-svn] [kmer-tools] 01/12: Annotate sim4db.install and exclude broken tools.

[Afif Elghraoui]

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commit b97d186b1da4b413a42c58b06d82ae4481e34aec
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Sat Jan 2 15:21:55 2016 -0800

    Annotate sim4db.install and exclude broken tools.
---
 debian/sim4db.install | 46 +++++++++++++++++++++++++++++++---------------
 1 file changed, 31 insertions(+), 15 deletions(-)

diff --git a/debian/sim4db.install b/debian/sim4db.install
index d9b3961..70f7db2 100644
--- a/debian/sim4db.install
+++ b/debian/sim4db.install
@@ -1,27 +1,43 @@
+# Main executable
 installdir/bin/sim4db	usr/bin
-# sim4dbutils
+
+###########################################################
+# sim4dbutils                                             #
+# http://kmer.sourceforge.net/wiki/index.php/Sim4db_Files #
+###########################################################
+
+## Most useful
+installdir/bin/convertPolishes	usr/bin
 installdir/bin/filterPolishes	usr/bin
-installdir/bin/headPolishes	usr/bin
-installdir/bin/mappedCoverage	usr/bin
 installdir/bin/mergePolishes	usr/bin
 installdir/bin/sortPolishes	usr/bin
+installdir/bin/convertToExtent	usr/bin
+
+## Occasionally Useful
+installdir/bin/fixPolishesIID	usr/bin
+installdir/bin/depthOfPolishes	usr/bin
+installdir/bin/headPolishes	usr/bin
 installdir/bin/pickBestPolish	usr/bin
-installdir/bin/pickBestPair	usr/bin
 installdir/bin/pickUniquePolish	usr/bin
-installdir/bin/cleanPolishes	usr/bin
-installdir/bin/fixPolishesIID	usr/bin
 installdir/bin/plotCoverageVsIdentity	usr/bin
-installdir/bin/parseSNP	usr/bin
+installdir/bin/uniqPolishes	usr/bin
+installdir/bin/realignPolishes	usr/bin
+installdir/bin/reportAlignmentDifferences	usr/bin
+
+## Used internally by ESTmapper
+installdir/bin/cleanPolishes	usr/bin
+installdir/bin/summarizePolishes	usr/bin
+
+## Unsupported and Deprecated
 installdir/bin/comparePolishes	usr/bin
 installdir/bin/convertToAtac	usr/bin
-installdir/bin/convertToExtent	usr/bin
-installdir/bin/convertPolishes	usr/bin
-installdir/bin/depthOfPolishes	usr/bin
 installdir/bin/detectChimera	usr/bin
-installdir/bin/uniqPolishes	usr/bin
-installdir/bin/summarizePolishes	usr/bin
+installdir/bin/mappedCoverage	usr/bin
+installdir/bin/parseSNP	usr/bin
 installdir/bin/removeDuplicate	usr/bin
 installdir/bin/vennPolishes	usr/bin
-installdir/bin/realignPolishes	usr/bin
-installdir/bin/removeRedundant	usr/bin
-installdir/bin/reportAlignmentDifferences	usr/bin
+# Marked as broken
+#installdir/bin/removeRedundant	usr/bin
+
+## Not mentioned on the wiki, but it gets built
+#installdir/bin/pickBestPair	usr/bin

-- 
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