[med-svn] [kmer-tools] branch master updated (f4c4fec -> 05de1bf)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif-guest pushed a change to branch master
in repository kmer-tools.

      from  f4c4fec   Don't install other READMEs to metapackage docs
       new  b97d186   Annotate sim4db.install and exclude broken tools.
       new  d4766ff   Add manpages for sim4db
       new  4d0f828   Mention programs used internally by ESTMapper in manpage
       new  b166596   Add manpage for leaff
       new  6ff49bf   Update d/copyright
       new  3a1510f   Update README.source to document situation with bundled kazlib
       new  cc71a88   Make the build system more flexible
       new  2c5ae91   Add note in README.source regarding monolithic source package
       new  77c817f   Add a heading to subsection in README.source
       new  c53d318   Add README.Debian to let users know some components aren't yet packaged
       new  e33b8d6   Add comment for why we can't use dh --parallel
       new  05de1bf   kmer-tools (0~20150903+r2013-1) unstable; urgency=low

The 12 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/README.Debian                           |  10 ++
 debian/README.source                           |  24 ++++-
 debian/changelog                               |  23 ++++-
 debian/copyright                               | 101 +++++++++++++++++++-
 debian/leaff.manpages                          |   1 +
 README.leaff => debian/man/leaff/leaff.1       | 104 ++++++---------------
 debian/man/sim4db/cleanPolishes.1              |   1 +
 debian/man/sim4db/comparePolishes.1            |   1 +
 debian/man/sim4db/convertPolishes.1            |   1 +
 debian/man/sim4db/convertToAtac.1              |   1 +
 debian/man/sim4db/convertToExtent.1            |   1 +
 debian/man/sim4db/depthOfPolishes.1            |   1 +
 debian/man/sim4db/detectChimera.1              |   1 +
 debian/man/sim4db/filterPolishes.1             |   1 +
 debian/man/sim4db/fixPolishesIID.1             |   1 +
 debian/man/sim4db/headPolishes.1               |   1 +
 debian/man/sim4db/mappedCoverage.1             |   1 +
 debian/man/sim4db/mergePolishes.1              |   1 +
 debian/man/sim4db/parseSNP.1                   |   1 +
 debian/man/sim4db/pickBestPolish.1             |   1 +
 debian/man/sim4db/pickUniquePolish.1           |   1 +
 debian/man/sim4db/plotCoverageVsIdentity.1     |   1 +
 debian/man/sim4db/realignPolishes.1            |   1 +
 debian/man/sim4db/removeDuplicate.1            |   1 +
 debian/man/sim4db/reportAlignmentDifferences.1 |   1 +
 debian/man/sim4db/sim4db.1                     | 123 +++++++++++++++++++++++++
 debian/man/sim4db/sim4dbutils.1                |  60 ++++++++++++
 debian/man/sim4db/sortPolishes.1               |   1 +
 debian/man/sim4db/summarizePolishes.1          |   1 +
 debian/man/sim4db/uniqPolishes.1               |   1 +
 debian/man/sim4db/vennPolishes.1               |   1 +
 debian/patches/allow-freebsd-build.patch       | 121 ++++++++++++++++++++++++
 debian/patches/series                          |   1 +
 debian/rules                                   |   4 +-
 debian/sim4db.install                          |  46 ++++++---
 debian/sim4db.manpages                         |   1 +
 36 files changed, 545 insertions(+), 97 deletions(-)
 create mode 100644 debian/README.Debian
 create mode 100644 debian/leaff.manpages
 copy README.leaff => debian/man/leaff/leaff.1 (74%)
 create mode 120000 debian/man/sim4db/cleanPolishes.1
 create mode 120000 debian/man/sim4db/comparePolishes.1
 create mode 120000 debian/man/sim4db/convertPolishes.1
 create mode 120000 debian/man/sim4db/convertToAtac.1
 create mode 120000 debian/man/sim4db/convertToExtent.1
 create mode 120000 debian/man/sim4db/depthOfPolishes.1
 create mode 120000 debian/man/sim4db/detectChimera.1
 create mode 120000 debian/man/sim4db/filterPolishes.1
 create mode 120000 debian/man/sim4db/fixPolishesIID.1
 create mode 120000 debian/man/sim4db/headPolishes.1
 create mode 120000 debian/man/sim4db/mappedCoverage.1
 create mode 120000 debian/man/sim4db/mergePolishes.1
 create mode 120000 debian/man/sim4db/parseSNP.1
 create mode 120000 debian/man/sim4db/pickBestPolish.1
 create mode 120000 debian/man/sim4db/pickUniquePolish.1
 create mode 120000 debian/man/sim4db/plotCoverageVsIdentity.1
 create mode 120000 debian/man/sim4db/realignPolishes.1
 create mode 120000 debian/man/sim4db/removeDuplicate.1
 create mode 120000 debian/man/sim4db/reportAlignmentDifferences.1
 create mode 100644 debian/man/sim4db/sim4db.1
 create mode 100644 debian/man/sim4db/sim4dbutils.1
 create mode 120000 debian/man/sim4db/sortPolishes.1
 create mode 120000 debian/man/sim4db/summarizePolishes.1
 create mode 120000 debian/man/sim4db/uniqPolishes.1
 create mode 120000 debian/man/sim4db/vennPolishes.1
 create mode 100644 debian/patches/allow-freebsd-build.patch
 create mode 100644 debian/patches/series
 create mode 100644 debian/sim4db.manpages

-- 
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