[med-svn] [python-mne] branch master updated (ed85992 -> 4abda55)
Yaroslav Halchenko
debian at onerussian.com
Tue Jan 5 02:16:12 UTC 2016
This is an automated email from the git hooks/post-receive script.
yoh pushed a change to branch master
in repository python-mne.
from ed85992 debian/control - added python-vtk | mayavi2 to the build-depends.
new 88d4b22 Imported Upstream version 0.11+dfsg
new c92a60c Merge tag 'upstream/0.11+dfsg'
new 0772455 changelog for 0.11+dfsg-1
new 4abda55 debian/patches/fix_test - dropped, upstreamed
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.travis.yml | 3 +-
Makefile | 4 +
README.rst | 10 +-
debian/changelog | 7 +
debian/patches/fix_test | 22 -
debian/patches/series | 1 -
doc/advanced_setup.rst | 43 +-
doc/conf.py | 11 +-
doc/contributing.rst | 22 +-
doc/getting_started.rst | 6 +-
doc/manual/datasets_index.rst | 125 ++
doc/manual/decoding.rst | 168 ++
doc/manual/index.rst | 32 +-
doc/manual/io.rst | 31 +-
doc/manual/memory.rst | 45 +
doc/manual/pitfalls.rst | 27 +
doc/manual/preprocessing/overview.rst | 8 +-
doc/manual/preprocessing/ssp.rst | 144 +-
doc/manual/{datasets.rst => sample_dataset.rst} | 0
doc/python_reference.rst | 21 +-
doc/this_project.inc | 2 +-
doc/tutorials/mne-report.png | Bin 0 -> 172544 bytes
doc/tutorials/report.rst | 5 +
doc/whats_new.rst | 113 +-
examples/datasets/plot_brainstorm_data.py | 3 +-
.../decoding/plot_decoding_time_generalization.py | 2 +-
examples/preprocessing/plot_maxwell_filter.py | 45 +
examples/visualization/plot_evoked_erf_erp.py | 6 +-
mne/__init__.py | 16 +-
mne/bem.py | 103 +-
mne/channels/channels.py | 108 +-
mne/channels/interpolation.py | 8 +-
mne/channels/layout.py | 18 +-
mne/channels/montage.py | 116 +-
mne/channels/tests/test_channels.py | 6 +-
mne/channels/tests/test_layout.py | 7 +-
mne/channels/tests/test_montage.py | 17 +-
mne/chpi.py | 55 +-
mne/commands/mne_flash_bem_model.py | 145 --
.../{mne_compare_fiff.py => mne_show_fiff.py} | 10 +-
mne/commands/tests/test_commands.py | 17 +-
mne/connectivity/tests/test_utils.py | 3 +-
mne/coreg.py | 4 +-
mne/cov.py | 27 +-
mne/data/coil_def_Elekta.dat | 10 +-
mne/datasets/utils.py | 19 +-
mne/decoding/__init__.py | 2 +-
mne/decoding/base.py | 20 +-
mne/decoding/csp.py | 132 +-
mne/decoding/mixin.py | 37 +
mne/decoding/tests/test_csp.py | 23 +
mne/decoding/tests/test_time_gen.py | 8 +-
mne/decoding/time_gen.py | 153 +-
mne/decoding/transformer.py | 8 +-
mne/dipole.py | 8 +-
mne/epochs.py | 428 +++--
mne/evoked.py | 56 +-
mne/forward/_compute_forward.py | 59 +-
mne/forward/_field_interpolation.py | 99 +-
mne/forward/_lead_dots.py | 129 +-
mne/forward/_make_forward.py | 178 ++-
mne/forward/forward.py | 43 +-
mne/forward/tests/test_field_interpolation.py | 14 +-
mne/forward/tests/test_make_forward.py | 2 +-
mne/gui/__init__.py | 7 +-
mne/gui/_coreg_gui.py | 2 +-
mne/gui/_fiducials_gui.py | 2 +-
mne/gui/_file_traits.py | 2 +-
mne/gui/_help.py | 16 +
mne/gui/_kit2fiff_gui.py | 151 +-
mne/gui/_marker_gui.py | 2 +-
mne/gui/_viewer.py | 2 +-
mne/gui/help/kit2fiff.json | 7 +
mne/gui/tests/test_kit2fiff_gui.py | 22 +-
mne/io/__init__.py | 55 +-
mne/io/array/array.py | 4 +-
mne/io/array/tests/test_array.py | 20 +-
mne/io/base.py | 183 ++-
mne/io/brainvision/brainvision.py | 218 +--
mne/io/brainvision/tests/data/test.vmrk | 1 +
mne/io/brainvision/tests/data/testv2.vhdr | 107 ++
.../tests/data/{test.vmrk => testv2.vmrk} | 12 +-
mne/io/brainvision/tests/test_brainvision.py | 78 +-
mne/io/bti/bti.py | 165 +-
mne/io/bti/tests/test_bti.py | 66 +-
mne/io/constants.py | 32 +-
mne/io/ctf.py | 256 ---
mne/io/ctf/__init__.py | 7 +
mne/io/ctf/constants.py | 38 +
mne/io/ctf/ctf.py | 218 +++
mne/io/ctf/eeg.py | 51 +
mne/io/ctf/hc.py | 85 +
mne/io/ctf/info.py | 401 +++++
mne/io/ctf/res4.py | 212 +++
.../numpy_ext => mne/io/ctf/tests}/__init__.py | 0
mne/io/ctf/tests/test_ctf.py | 171 ++
mne/io/ctf/trans.py | 170 ++
mne/io/ctf_comp.py | 159 ++
mne/io/edf/edf.py | 231 +--
mne/io/edf/tests/test_edf.py | 139 +-
mne/io/eeglab/__init__.py | 5 +
mne/io/eeglab/eeglab.py | 447 ++++++
.../numpy_ext => mne/io/eeglab/tests}/__init__.py | 0
mne/io/eeglab/tests/test_eeglab.py | 85 +
mne/io/egi/egi.py | 227 ++-
mne/io/egi/tests/data/test_egi.txt | 257 +++
mne/io/egi/tests/test_egi.py | 58 +-
mne/io/fiff/raw.py | 23 +-
.../fiff/tests/{test_raw.py => test_raw_fiff.py} | 14 +-
mne/io/kit/constants.py | 30 +-
mne/io/kit/kit.py | 108 +-
mne/io/kit/tests/test_kit.py | 113 +-
mne/io/meas_info.py | 77 +-
mne/io/nicolet/__init__.py | 7 +
mne/io/nicolet/nicolet.py | 206 +++
.../numpy_ext => mne/io/nicolet/tests}/__init__.py | 0
mne/io/nicolet/tests/data/test_nicolet_raw.data | Bin 0 -> 29696 bytes
mne/io/nicolet/tests/data/test_nicolet_raw.head | 11 +
mne/io/nicolet/tests/test_nicolet.py | 20 +
mne/io/open.py | 10 +-
mne/io/pick.py | 71 +-
mne/io/proc_history.py | 48 +-
mne/io/proj.py | 30 +-
mne/io/reference.py | 8 +-
mne/io/tag.py | 2 -
mne/io/tests/test_apply_function.py | 18 +-
mne/io/tests/test_pick.py | 77 +-
mne/io/tests/test_raw.py | 82 +-
mne/io/tests/test_reference.py | 31 +-
mne/io/utils.py | 165 ++
mne/io/write.py | 28 +-
mne/minimum_norm/inverse.py | 6 +-
mne/preprocessing/__init__.py | 2 +-
mne/preprocessing/ecg.py | 55 +-
mne/preprocessing/ica.py | 100 +-
mne/preprocessing/maxwell.py | 1631 ++++++++++++++++----
mne/preprocessing/stim.py | 4 +-
mne/preprocessing/tests/test_ecg.py | 32 +-
mne/preprocessing/tests/test_ica.py | 44 +-
mne/preprocessing/tests/test_maxwell.py | 734 +++++++--
mne/preprocessing/tests/test_ssp.py | 22 +
mne/proj.py | 12 +-
mne/realtime/fieldtrip_client.py | 693 +++++----
mne/simulation/__init__.py | 6 +-
mne/simulation/evoked.py | 70 +-
mne/simulation/raw.py | 4 +-
mne/simulation/source.py | 111 +-
mne/source_estimate.py | 47 +-
mne/source_space.py | 55 +-
mne/stats/__init__.py | 3 +-
mne/stats/parametric.py | 22 -
mne/stats/regression.py | 22 +-
mne/stats/tests/test_cluster_level.py | 27 +-
mne/stats/tests/test_parametric.py | 7 +-
mne/stats/tests/test_regression.py | 15 +
mne/tests/__init__.py | 1 +
mne/tests/common.py | 74 +
mne/tests/test_bem.py | 41 +-
mne/tests/test_chpi.py | 33 +-
mne/tests/test_coreg.py | 2 +-
mne/tests/test_dipole.py | 10 +-
mne/tests/test_docstring_parameters.py | 1 -
mne/tests/test_epochs.py | 223 ++-
mne/tests/test_evoked.py | 24 +-
mne/tests/test_filter.py | 83 +-
mne/tests/test_fixes.py | 6 +-
mne/tests/test_label.py | 2 +-
mne/tests/test_line_endings.py | 68 +
mne/tests/test_proj.py | 3 +
mne/tests/test_source_estimate.py | 60 +-
mne/tests/test_source_space.py | 9 +-
mne/tests/test_surface.py | 17 +-
mne/tests/test_transforms.py | 49 +-
mne/tests/test_utils.py | 12 +-
mne/time_frequency/psd.py | 2 +-
mne/time_frequency/tests/test_tfr.py | 31 +-
mne/time_frequency/tfr.py | 72 +-
mne/transforms.py | 153 +-
mne/utils.py | 321 ++--
mne/viz/_3d.py | 13 +-
mne/viz/__init__.py | 9 +-
mne/viz/circle.py | 4 +-
mne/viz/decoding.py | 8 +-
mne/viz/epochs.py | 178 +--
mne/viz/evoked.py | 163 +-
mne/viz/ica.py | 155 +-
mne/viz/misc.py | 20 +-
mne/viz/montage.py | 6 +-
mne/viz/raw.py | 124 +-
mne/viz/tests/test_3d.py | 4 +-
mne/viz/tests/test_circle.py | 2 +-
mne/viz/tests/test_epochs.py | 5 +-
mne/viz/tests/test_evoked.py | 9 +-
mne/viz/tests/test_ica.py | 14 +
mne/viz/tests/test_raw.py | 6 +-
mne/viz/tests/test_topo.py | 10 +-
mne/viz/tests/test_topomap.py | 6 +-
mne/viz/tests/test_utils.py | 7 +-
mne/viz/topo.py | 86 +-
mne/viz/topomap.py | 76 +-
mne/viz/utils.py | 26 +-
setup.py | 4 +
tutorials/plot_ica_from_raw.py | 4 +-
tutorials/plot_introduction.py | 23 +-
.../plot_spatio_temporal_cluster_stats_sensor.py | 4 +-
205 files changed, 10101 insertions(+), 4430 deletions(-)
delete mode 100644 debian/patches/fix_test
create mode 100644 doc/manual/datasets_index.rst
create mode 100644 doc/manual/decoding.rst
create mode 100644 doc/manual/memory.rst
create mode 100644 doc/manual/pitfalls.rst
rename doc/manual/{datasets.rst => sample_dataset.rst} (100%)
create mode 100644 doc/tutorials/mne-report.png
create mode 100644 examples/preprocessing/plot_maxwell_filter.py
delete mode 100755 mne/commands/mne_flash_bem_model.py
copy mne/commands/{mne_compare_fiff.py => mne_show_fiff.py} (61%)
mode change 100755 => 100644
create mode 100644 mne/gui/_help.py
create mode 100644 mne/gui/help/kit2fiff.json
create mode 100644 mne/io/brainvision/tests/data/testv2.vhdr
copy mne/io/brainvision/tests/data/{test.vmrk => testv2.vmrk} (52%)
mode change 100755 => 100644
delete mode 100644 mne/io/ctf.py
create mode 100644 mne/io/ctf/__init__.py
create mode 100644 mne/io/ctf/constants.py
create mode 100644 mne/io/ctf/ctf.py
create mode 100644 mne/io/ctf/eeg.py
create mode 100644 mne/io/ctf/hc.py
create mode 100644 mne/io/ctf/info.py
create mode 100644 mne/io/ctf/res4.py
copy {doc/sphinxext/numpy_ext => mne/io/ctf/tests}/__init__.py (100%)
create mode 100644 mne/io/ctf/tests/test_ctf.py
create mode 100644 mne/io/ctf/trans.py
create mode 100644 mne/io/ctf_comp.py
create mode 100644 mne/io/eeglab/__init__.py
create mode 100644 mne/io/eeglab/eeglab.py
copy {doc/sphinxext/numpy_ext => mne/io/eeglab/tests}/__init__.py (100%)
create mode 100644 mne/io/eeglab/tests/test_eeglab.py
create mode 100644 mne/io/egi/tests/data/test_egi.txt
rename mne/io/fiff/tests/{test_raw.py => test_raw_fiff.py} (99%)
create mode 100644 mne/io/nicolet/__init__.py
create mode 100644 mne/io/nicolet/nicolet.py
copy {doc/sphinxext/numpy_ext => mne/io/nicolet/tests}/__init__.py (100%)
create mode 100644 mne/io/nicolet/tests/data/test_nicolet_raw.data
create mode 100644 mne/io/nicolet/tests/data/test_nicolet_raw.head
create mode 100644 mne/io/nicolet/tests/test_nicolet.py
create mode 100644 mne/io/utils.py
create mode 100644 mne/tests/common.py
create mode 100644 mne/tests/test_line_endings.py
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