[med-svn] [python-mne] 02/04: Merge tag 'upstream/0.11+dfsg'
Yaroslav Halchenko
debian at onerussian.com
Tue Jan 5 02:16:12 UTC 2016
This is an automated email from the git hooks/post-receive script.
yoh pushed a commit to branch master
in repository python-mne.
commit c92a60cf2e56c2c48a7b75c37f58dc9924949c35
Merge: ed85992 88d4b22
Author: Yaroslav Halchenko <debian at onerussian.com>
Date: Mon Jan 4 20:51:39 2016 -0500
Merge tag 'upstream/0.11+dfsg'
Upstream version 0.11+dfsg
* tag 'upstream/0.11+dfsg':
Imported Upstream version 0.11+dfsg
.travis.yml | 3 +-
Makefile | 4 +
README.rst | 10 +-
doc/advanced_setup.rst | 43 +-
doc/conf.py | 11 +-
doc/contributing.rst | 22 +-
doc/getting_started.rst | 6 +-
doc/manual/datasets_index.rst | 125 ++
doc/manual/decoding.rst | 168 ++
doc/manual/index.rst | 32 +-
doc/manual/io.rst | 31 +-
doc/manual/memory.rst | 45 +
doc/manual/pitfalls.rst | 27 +
doc/manual/preprocessing/overview.rst | 8 +-
doc/manual/preprocessing/ssp.rst | 144 +-
doc/manual/{datasets.rst => sample_dataset.rst} | 0
doc/python_reference.rst | 21 +-
doc/this_project.inc | 2 +-
doc/tutorials/mne-report.png | Bin 0 -> 172544 bytes
doc/tutorials/report.rst | 5 +
doc/whats_new.rst | 113 +-
examples/datasets/plot_brainstorm_data.py | 3 +-
.../decoding/plot_decoding_time_generalization.py | 2 +-
examples/preprocessing/plot_maxwell_filter.py | 45 +
examples/visualization/plot_evoked_erf_erp.py | 6 +-
mne/__init__.py | 16 +-
mne/bem.py | 103 +-
mne/channels/channels.py | 108 +-
mne/channels/interpolation.py | 8 +-
mne/channels/layout.py | 18 +-
mne/channels/montage.py | 116 +-
mne/channels/tests/test_channels.py | 6 +-
mne/channels/tests/test_layout.py | 7 +-
mne/channels/tests/test_montage.py | 17 +-
mne/chpi.py | 55 +-
mne/commands/mne_flash_bem_model.py | 145 --
mne/commands/mne_show_fiff.py | 27 +
mne/commands/tests/test_commands.py | 17 +-
mne/connectivity/tests/test_utils.py | 3 +-
mne/coreg.py | 4 +-
mne/cov.py | 27 +-
mne/data/coil_def_Elekta.dat | 10 +-
mne/datasets/utils.py | 19 +-
mne/decoding/__init__.py | 2 +-
mne/decoding/base.py | 20 +-
mne/decoding/csp.py | 132 +-
mne/decoding/mixin.py | 37 +
mne/decoding/tests/test_csp.py | 23 +
mne/decoding/tests/test_time_gen.py | 8 +-
mne/decoding/time_gen.py | 153 +-
mne/decoding/transformer.py | 8 +-
mne/dipole.py | 8 +-
mne/epochs.py | 428 +++--
mne/evoked.py | 56 +-
mne/forward/_compute_forward.py | 59 +-
mne/forward/_field_interpolation.py | 99 +-
mne/forward/_lead_dots.py | 129 +-
mne/forward/_make_forward.py | 178 ++-
mne/forward/forward.py | 43 +-
mne/forward/tests/test_field_interpolation.py | 14 +-
mne/forward/tests/test_make_forward.py | 2 +-
mne/gui/__init__.py | 7 +-
mne/gui/_coreg_gui.py | 2 +-
mne/gui/_fiducials_gui.py | 2 +-
mne/gui/_file_traits.py | 2 +-
mne/gui/_help.py | 16 +
mne/gui/_kit2fiff_gui.py | 151 +-
mne/gui/_marker_gui.py | 2 +-
mne/gui/_viewer.py | 2 +-
mne/gui/help/kit2fiff.json | 7 +
mne/gui/tests/test_kit2fiff_gui.py | 22 +-
mne/io/__init__.py | 55 +-
mne/io/array/array.py | 4 +-
mne/io/array/tests/test_array.py | 20 +-
mne/io/base.py | 183 ++-
mne/io/brainvision/brainvision.py | 218 +--
mne/io/brainvision/tests/data/test.vmrk | 1 +
mne/io/brainvision/tests/data/testv2.vhdr | 107 ++
.../tests/data/{test.vmrk => testv2.vmrk} | 12 +-
mne/io/brainvision/tests/test_brainvision.py | 78 +-
mne/io/bti/bti.py | 165 +-
mne/io/bti/tests/test_bti.py | 66 +-
mne/io/constants.py | 32 +-
mne/io/ctf.py | 256 ---
mne/io/ctf/__init__.py | 7 +
mne/io/ctf/constants.py | 38 +
mne/io/ctf/ctf.py | 218 +++
mne/io/ctf/eeg.py | 51 +
mne/io/ctf/hc.py | 85 +
mne/io/ctf/info.py | 401 +++++
mne/io/ctf/res4.py | 212 +++
mne/{ => io/ctf}/tests/__init__.py | 0
mne/io/ctf/tests/test_ctf.py | 171 ++
mne/io/ctf/trans.py | 170 ++
mne/io/ctf_comp.py | 159 ++
mne/io/edf/edf.py | 231 +--
mne/io/edf/tests/test_edf.py | 139 +-
mne/io/eeglab/__init__.py | 5 +
mne/io/eeglab/eeglab.py | 447 ++++++
mne/{ => io/eeglab}/tests/__init__.py | 0
mne/io/eeglab/tests/test_eeglab.py | 85 +
mne/io/egi/egi.py | 227 ++-
mne/io/egi/tests/data/test_egi.txt | 257 +++
mne/io/egi/tests/test_egi.py | 58 +-
mne/io/fiff/raw.py | 23 +-
.../fiff/tests/{test_raw.py => test_raw_fiff.py} | 14 +-
mne/io/kit/constants.py | 30 +-
mne/io/kit/kit.py | 108 +-
mne/io/kit/tests/test_kit.py | 113 +-
mne/io/meas_info.py | 77 +-
mne/io/nicolet/__init__.py | 7 +
mne/io/nicolet/nicolet.py | 206 +++
mne/{ => io/nicolet}/tests/__init__.py | 0
mne/io/nicolet/tests/data/test_nicolet_raw.data | Bin 0 -> 29696 bytes
mne/io/nicolet/tests/data/test_nicolet_raw.head | 11 +
mne/io/nicolet/tests/test_nicolet.py | 20 +
mne/io/open.py | 10 +-
mne/io/pick.py | 71 +-
mne/io/proc_history.py | 48 +-
mne/io/proj.py | 30 +-
mne/io/reference.py | 8 +-
mne/io/tag.py | 2 -
mne/io/tests/test_apply_function.py | 18 +-
mne/io/tests/test_pick.py | 77 +-
mne/io/tests/test_raw.py | 82 +-
mne/io/tests/test_reference.py | 31 +-
mne/io/utils.py | 165 ++
mne/io/write.py | 28 +-
mne/minimum_norm/inverse.py | 6 +-
mne/preprocessing/__init__.py | 2 +-
mne/preprocessing/ecg.py | 55 +-
mne/preprocessing/ica.py | 100 +-
mne/preprocessing/maxwell.py | 1631 ++++++++++++++++----
mne/preprocessing/stim.py | 4 +-
mne/preprocessing/tests/test_ecg.py | 32 +-
mne/preprocessing/tests/test_ica.py | 44 +-
mne/preprocessing/tests/test_maxwell.py | 734 +++++++--
mne/preprocessing/tests/test_ssp.py | 22 +
mne/proj.py | 12 +-
mne/realtime/fieldtrip_client.py | 693 +++++----
mne/simulation/__init__.py | 6 +-
mne/simulation/evoked.py | 70 +-
mne/simulation/raw.py | 4 +-
mne/simulation/source.py | 111 +-
mne/source_estimate.py | 47 +-
mne/source_space.py | 55 +-
mne/stats/__init__.py | 3 +-
mne/stats/parametric.py | 22 -
mne/stats/regression.py | 22 +-
mne/stats/tests/test_cluster_level.py | 27 +-
mne/stats/tests/test_parametric.py | 7 +-
mne/stats/tests/test_regression.py | 15 +
mne/tests/__init__.py | 1 +
mne/tests/common.py | 74 +
mne/tests/test_bem.py | 41 +-
mne/tests/test_chpi.py | 33 +-
mne/tests/test_coreg.py | 2 +-
mne/tests/test_dipole.py | 10 +-
mne/tests/test_docstring_parameters.py | 1 -
mne/tests/test_epochs.py | 223 ++-
mne/tests/test_evoked.py | 24 +-
mne/tests/test_filter.py | 83 +-
mne/tests/test_fixes.py | 6 +-
mne/tests/test_label.py | 2 +-
mne/tests/test_line_endings.py | 68 +
mne/tests/test_proj.py | 3 +
mne/tests/test_source_estimate.py | 60 +-
mne/tests/test_source_space.py | 9 +-
mne/tests/test_surface.py | 17 +-
mne/tests/test_transforms.py | 49 +-
mne/tests/test_utils.py | 12 +-
mne/time_frequency/psd.py | 2 +-
mne/time_frequency/tests/test_tfr.py | 31 +-
mne/time_frequency/tfr.py | 72 +-
mne/transforms.py | 153 +-
mne/utils.py | 321 ++--
mne/viz/_3d.py | 13 +-
mne/viz/__init__.py | 9 +-
mne/viz/circle.py | 4 +-
mne/viz/decoding.py | 8 +-
mne/viz/epochs.py | 178 +--
mne/viz/evoked.py | 163 +-
mne/viz/ica.py | 155 +-
mne/viz/misc.py | 20 +-
mne/viz/montage.py | 6 +-
mne/viz/raw.py | 124 +-
mne/viz/tests/test_3d.py | 4 +-
mne/viz/tests/test_circle.py | 2 +-
mne/viz/tests/test_epochs.py | 5 +-
mne/viz/tests/test_evoked.py | 9 +-
mne/viz/tests/test_ica.py | 14 +
mne/viz/tests/test_raw.py | 6 +-
mne/viz/tests/test_topo.py | 10 +-
mne/viz/tests/test_topomap.py | 6 +-
mne/viz/tests/test_utils.py | 7 +-
mne/viz/topo.py | 86 +-
mne/viz/topomap.py | 76 +-
mne/viz/utils.py | 26 +-
setup.py | 4 +
tutorials/plot_ica_from_raw.py | 4 +-
tutorials/plot_introduction.py | 23 +-
.../plot_spatio_temporal_cluster_stats_sensor.py | 4 +-
202 files changed, 10116 insertions(+), 4402 deletions(-)
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