[med-svn] [ngs-sdk] 04/15: fix cleanup

[Olivier Sallou]

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osallou pushed a commit to branch master
in repository ngs-sdk.

commit af333515225b25bf348cc99d1b13ee9912e39f0b
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Mon Jan 4 13:29:31 2016 +0100

    fix cleanup
---
 debian/control           | 21 +++++++++++++++++++++
 debian/libngs-java.jlibs |  1 +
 debian/rules             |  4 ++++
 3 files changed, 26 insertions(+)

diff --git a/debian/control b/debian/control
index 87ea8f4..6e25aa3 100644
--- a/debian/control
+++ b/debian/control
@@ -55,6 +55,27 @@ Description: Next Generation Sequencing language Bindings (development)
  .
  This is the development package.
 
+Package: libngs-java
+Architecture: all
+Section: java
+Depends: ${misc:Depends}, ${java:Depends}
+Recommends: ${java:Recommends}
+Description: Next Generation Sequencing language Bindings (Java bindings)
+ NGS is a new, domain-specific API for accessing reads, alignments and
+ pileups produced from Next Generation Sequencing. The API itself is
+ independent from any particular back-end implementation, and supports
+ use of multiple back-ends simultaneously. It also provides a library for
+ building new back-end "engines". The engine for accessing SRA data is
+ contained within the sister repository ncbi-vdb.
+ .
+ The API is currently expressed in C++, Java and Python languages. The
+ design makes it possible to maintain a high degree of similarity between
+ the code in one language and code in another - especially between C++
+ and Java.
+ .
+ Java bindings.
+
+
 Package: python-ngs
 Architecture: any
 Section: python
diff --git a/debian/libngs-java.jlibs b/debian/libngs-java.jlibs
new file mode 100644
index 0000000..d6be270
--- /dev/null
+++ b/debian/libngs-java.jlibs
@@ -0,0 +1 @@
+ngs-java/*/ngs-java/jar/ngs-java.jar
diff --git a/debian/rules b/debian/rules
index 1d9cd83..ba14168 100755
--- a/debian/rules
+++ b/debian/rules
@@ -31,7 +31,11 @@ override_dh_auto_clean:
 	if [ -e ngs-sdk/Makefile.config.$(OS).$(CPU)] ; then \
 	    dh_auto_clean --sourcedirectory=$(DEBPKGNAME) ; \
 	fi
+	rm -rf ngs-java/$(BUILDTYPE)
+	rm -rf ngs-bam/$(BUILDTYPE)
 	rm -rf $(DEBPKGNAME)/$(BUILDTYPE)
+	rm -rf debian/python-ngs-sdk
+	rm -rf debian/python3-ngs-sdk
 
 override_dh_auto_configure:
 	# ./configure --prefix=/usr --javadir=/usr/share/java

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