[med-svn] [htsjdk] 01/08: add libngs-java dep

[Olivier Sallou]

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osallou pushed a commit to branch master
in repository htsjdk.

commit 57a90b3f014c712665d587b1ea82b5bbaaa7624c
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Tue Jan 5 10:07:57 2016 +0100

    add libngs-java dep
---
 debian/control              | 1 +
 debian/patches/10-build.xml | 8 +++++---
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/debian/control b/debian/control
index 0aa9e5d..14987c9 100644
--- a/debian/control
+++ b/debian/control
@@ -21,6 +21,7 @@ Build-Depends: ant,
 # required for tests:
                libjcommander-java,
                ant-optional,
+               libngs-java
 Build-Conflicts: openjdk-7-jre-headless
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/htsjdk.git
diff --git a/debian/patches/10-build.xml b/debian/patches/10-build.xml
index 10e2b8e..b9e29ab 100644
--- a/debian/patches/10-build.xml
+++ b/debian/patches/10-build.xml
@@ -16,7 +16,7 @@ Forwarded: no
      <property name="htsjdk-version" value="2.0.1"/>
      <property name="htsjdk-version-file" value="htsjdk.version.properties"/>
      <property name="testng.verbosity" value="2"/>
-@@ -72,6 +72,11 @@
+@@ -72,6 +72,12 @@
              <fileset dir="${lib}">
                  <include name="**/*.jar"/>
              </fileset>
@@ -25,10 +25,11 @@ Forwarded: no
 +            <pathelement path="/usr/share/java/jbzip2.jar"/>
 +            <pathelement path="/usr/share/java/snappy-java.jar"/>
 +            <pathelement path="/usr/share/java/testng.jar"/>
++            <pathelement path="/usr/share/java/ngs-java.jar"/>
          </path>
      </target>
  
-@@ -128,6 +133,7 @@
+@@ -128,6 +134,7 @@
                  <pathelement path="${classes}"/>
                  <pathelement path="${classes.test}"/>
                  <pathelement path="${scripts}"/>
@@ -36,7 +37,7 @@ Forwarded: no
              </classpath>
              <classfileset dir="${classes.test}">
                  <include name="**/Test*.class"/>
-@@ -204,8 +210,13 @@
+@@ -204,8 +211,14 @@
                  <fileset dir="${lib}">
                      <include name="**/*.jar" />
                  </fileset>
@@ -45,6 +46,7 @@ Forwarded: no
 +                <pathelement path="/usr/share/java/jbzip2.jar"/>
 +                <pathelement path="/usr/share/java/commons-jexl2.jar"/>
 +                <pathelement path="/usr/share/java/commons-compress.jar"/>
++                <pathelement path="/usr/share/java/ngs-java.jar"/>
              </classpath>
 -            <link href="http://java.sun.com/j2se/1.5.0/docs/api/"/>
 +            <link href="/usr/share/doc/default-jdk-doc/api"/>

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