[med-svn] [htsjdk] 01/08: add libngs-java dep
Olivier Sallou
osallou at debian.org
Tue Jan 5 15:44:10 UTC 2016
This is an automated email from the git hooks/post-receive script.
osallou pushed a commit to branch master
in repository htsjdk.
commit 57a90b3f014c712665d587b1ea82b5bbaaa7624c
Author: Olivier Sallou <olivier.sallou at debian.org>
Date: Tue Jan 5 10:07:57 2016 +0100
add libngs-java dep
---
debian/control | 1 +
debian/patches/10-build.xml | 8 +++++---
2 files changed, 6 insertions(+), 3 deletions(-)
diff --git a/debian/control b/debian/control
index 0aa9e5d..14987c9 100644
--- a/debian/control
+++ b/debian/control
@@ -21,6 +21,7 @@ Build-Depends: ant,
# required for tests:
libjcommander-java,
ant-optional,
+ libngs-java
Build-Conflicts: openjdk-7-jre-headless
Standards-Version: 3.9.6
Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/htsjdk.git
diff --git a/debian/patches/10-build.xml b/debian/patches/10-build.xml
index 10e2b8e..b9e29ab 100644
--- a/debian/patches/10-build.xml
+++ b/debian/patches/10-build.xml
@@ -16,7 +16,7 @@ Forwarded: no
<property name="htsjdk-version" value="2.0.1"/>
<property name="htsjdk-version-file" value="htsjdk.version.properties"/>
<property name="testng.verbosity" value="2"/>
-@@ -72,6 +72,11 @@
+@@ -72,6 +72,12 @@
<fileset dir="${lib}">
<include name="**/*.jar"/>
</fileset>
@@ -25,10 +25,11 @@ Forwarded: no
+ <pathelement path="/usr/share/java/jbzip2.jar"/>
+ <pathelement path="/usr/share/java/snappy-java.jar"/>
+ <pathelement path="/usr/share/java/testng.jar"/>
++ <pathelement path="/usr/share/java/ngs-java.jar"/>
</path>
</target>
-@@ -128,6 +133,7 @@
+@@ -128,6 +134,7 @@
<pathelement path="${classes}"/>
<pathelement path="${classes.test}"/>
<pathelement path="${scripts}"/>
@@ -36,7 +37,7 @@ Forwarded: no
</classpath>
<classfileset dir="${classes.test}">
<include name="**/Test*.class"/>
-@@ -204,8 +210,13 @@
+@@ -204,8 +211,14 @@
<fileset dir="${lib}">
<include name="**/*.jar" />
</fileset>
@@ -45,6 +46,7 @@ Forwarded: no
+ <pathelement path="/usr/share/java/jbzip2.jar"/>
+ <pathelement path="/usr/share/java/commons-jexl2.jar"/>
+ <pathelement path="/usr/share/java/commons-compress.jar"/>
++ <pathelement path="/usr/share/java/ngs-java.jar"/>
</classpath>
- <link href="http://java.sun.com/j2se/1.5.0/docs/api/"/>
+ <link href="/usr/share/doc/default-jdk-doc/api"/>
--
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