[med-svn] [htsjdk] 04/08: skip more network tests

[Olivier Sallou]

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osallou pushed a commit to branch master
in repository htsjdk.

commit 7a326a8785ccab80c8468ef726872e444aa9f58c
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Tue Jan 5 14:03:12 2016 +0100

    skip more network tests
---
 debian/patches/13-skip_network_tests | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

diff --git a/debian/patches/13-skip_network_tests b/debian/patches/13-skip_network_tests
index 0fa4151..bc1bd4b 100644
--- a/debian/patches/13-skip_network_tests
+++ b/debian/patches/13-skip_network_tests
@@ -53,3 +53,36 @@ Last-Updated: 2015-01-06
  
  
  }
+--- a/src/tests/java/htsjdk/tribble/AbstractFeatureReaderTest.java
++++ b/src/tests/java/htsjdk/tribble/AbstractFeatureReaderTest.java
+@@ -21,30 +21,5 @@
+     final static String HTTP_INDEXED_VCF_PATH = "http://www.broadinstitute.org/~picard/testdata/ex2.vcf";
+     final static String LOCAL_MIRROR_HTTP_INDEXED_VCF_PATH = VariantBaseTest.variantTestDataRoot + "ex2.vcf";
+ 
+-    /**
+-     * Asserts readability and correctness of VCF over HTTP.  The VCF is indexed and requires and index.
+-     */
+-    @Test
+-    public void testVcfOverHTTP() throws IOException {
+-        final VCFCodec codec = new VCFCodec();
+-        final AbstractFeatureReader<VariantContext, LineIterator> featureReaderHttp =
+-                AbstractFeatureReader.getFeatureReader(HTTP_INDEXED_VCF_PATH, codec, true); // Require an index to
+-        final AbstractFeatureReader<VariantContext, LineIterator> featureReaderLocal =
+-                AbstractFeatureReader.getFeatureReader(LOCAL_MIRROR_HTTP_INDEXED_VCF_PATH, codec, false);
+-        final CloseableTribbleIterator<VariantContext> localIterator = featureReaderLocal.iterator();
+-        for (final Feature feat : featureReaderHttp.iterator()) {
+-            assertEquals(feat.toString(), localIterator.next().toString());
+-        }
+-        assertFalse(localIterator.hasNext());
+-    }
+ 
+-    @Test
+-    public void testLoadBEDFTP() throws Exception {
+-        final String path = "ftp://ftp.broadinstitute.org/distribution/igv/TEST/cpgIslands with spaces.hg18.bed";
+-        final BEDCodec codec = new BEDCodec();
+-        final AbstractFeatureReader<BEDFeature, LineIterator> bfs = AbstractFeatureReader.getFeatureReader(path, codec, false);
+-        for (final Feature feat : bfs.iterator()) {
+-            assertNotNull(feat);
+-        }
+-    }
+ }

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