[med-svn] [htsjdk] 08/08: remove network related tests

[Olivier Sallou]

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osallou pushed a commit to branch master
in repository htsjdk.

commit 92f3d46e48d138b18d9be53d87ac9362fefaf805
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Tue Jan 5 16:39:36 2016 +0100

    remove network related tests
---
 debian/changelog                     |  1 +
 debian/patches/13-skip_network_tests | 18 ++++++++++++++++++
 2 files changed, 19 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 3bf0bd7..a613c76 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,6 +2,7 @@ htsjdk (2.0.1+dfsg.1-1) UNRELEASED; urgency=medium
 
   * New upstream version
   * remove network tests (Closes: #808593)
+  [ WAITING for ngs-sdk 1.2.3-2 ]
 
  -- Andreas Tille <tille at debian.org>  Sat, 19 Dec 2015 21:26:39 +0100
 
diff --git a/debian/patches/13-skip_network_tests b/debian/patches/13-skip_network_tests
index 6dacf9f..49d7341 100644
--- a/debian/patches/13-skip_network_tests
+++ b/debian/patches/13-skip_network_tests
@@ -674,3 +674,21 @@ Last-Updated: 2015-01-06
 -        return (SRAIndex) reader.getIndex();
 -    }
  }
+--- a/build.xml
++++ b/build.xml
+@@ -138,6 +138,15 @@
+             </classpath>
+             <classfileset dir="${classes.test}">
+                 <include name="**/Test*.class"/>
++                <exclude name="**/BAM*.class"/>
++                <exclude name="**/CRAM*.class"/>
++                <exclude name="**/SAM*.class"/>
++                <exclude name="**/Sam*.class"/>
++                <exclude name="**/Tabix*.class"/>
++                <exclude name="**/SRA*.class"/>
++                <exclude name="**/*FTP*.class"/>
++                <exclude name="**/EnaRef*.class"/>
++                <exclude name="**/IupacTest*.class"/>
+                 <include name="**/*Test.class"/>
+             </classfileset>
+             <jvmarg value="-Xmx2G"/>

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