[med-svn] r20975 - in trunk/packages/genometools/tags: . 1.5.8-1/debian 1.5.8-1/debian/patches
Sascha Steinbiss
sascha-guest at moszumanska.debian.org
Thu Jan 7 22:38:52 UTC 2016
Author: sascha-guest
Date: 2016-01-07 22:38:52 +0000 (Thu, 07 Jan 2016)
New Revision: 20975
Added:
trunk/packages/genometools/tags/1.5.8-1/
trunk/packages/genometools/tags/1.5.8-1/debian/changelog
trunk/packages/genometools/tags/1.5.8-1/debian/genometools-common.install
trunk/packages/genometools/tags/1.5.8-1/debian/patches/series
trunk/packages/genometools/tags/1.5.8-1/debian/patches/spelling
Removed:
trunk/packages/genometools/tags/1.5.8-1/debian/changelog
trunk/packages/genometools/tags/1.5.8-1/debian/genometools-common.install
trunk/packages/genometools/tags/1.5.8-1/debian/patches/series
Log:
[svn-buildpackage] Tagging genometools 1.5.8-1
Deleted: trunk/packages/genometools/tags/1.5.8-1/debian/changelog
===================================================================
--- trunk/packages/genometools/trunk/debian/changelog 2016-01-07 11:50:25 UTC (rev 20966)
+++ trunk/packages/genometools/tags/1.5.8-1/debian/changelog 2016-01-07 22:38:52 UTC (rev 20975)
@@ -1,225 +0,0 @@
-genometools (1.5.7-7) unstable; urgency=medium
-
- * build API documentation reproducibly
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Sat, 12 Dec 2015 19:13:40 +0000
-
-genometools (1.5.7-6) unstable; urgency=medium
-
- * Reintroduce mips64el which was removed my mistake.
- * Fix detection of x32 build
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Wed, 09 Dec 2015 22:20:47 +0000
-
-genometools (1.5.7-5) unstable; urgency=medium
-
- * Try to load correct renamed .so file in Python bindings
- * Refresh patches
- * Use DEB_TARGET_ARCH to determine build archs
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Tue, 08 Dec 2015 00:42:49 +0000
-
-genometools (1.5.7-4) unstable; urgency=medium
-
- * Fix builds on less popular platforms
- - Check if faketime works
- - Do no use -m32/-m64 on x32
- * Improve reproducibility
- - sort files to compile by name
- * Add autopkgtests
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Fri, 04 Dec 2015 22:18:11 +0000
-
-genometools (1.5.7-3) unstable; urgency=low
-
- * d/control: remove obsolete dependency on libncurses5
- Closes: #804576
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Mon, 09 Nov 2015 19:15:29 +0000
-
-genometools (1.5.7-2) unstable; urgency=low
-
- * disable parallel building
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Sat, 10 Oct 2015 12:04:37 +0000
-
-genometools (1.5.7-1) unstable; urgency=low
-
- * New upstream release.
- * d/rules: try ro improve reproducibility
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Sun, 13 Sep 2015 08:22:39 +0000
-
-genometools (1.5.6-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Mon, 22 Jun 2015 19:26:35 +0000
-
-genometools (1.5.5-2) unstable; urgency=low
-
- * Disable faketime on hurd-i386 to fix FTBFS on that arch.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Wed, 10 Jun 2015 10:03:22 +0000
-
-genometools (1.5.5-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Sat, 06 Jun 2015 09:49:49 +0000
-
-genometools (1.5.4-2) experimental; urgency=low
-
- * Work towards reproducibility.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Sun, 22 Mar 2015 08:09:07 +0000
-
-genometools (1.5.4-1) experimental; urgency=low
-
- * New upstream release.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Fri, 12 Dec 2014 12:06:42 +0000
-
-genometools (1.5.3-2) unstable; urgency=low
-
- * Reactivate missing patch.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Fri, 05 Sep 2014 14:23:31 +0100
-
-genometools (1.5.3-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Wed, 16 Jul 2014 20:32:19 +0100
-
-genometools (1.5.2-4) unstable; urgency=low
-
- * Incorporate patches addressing type conversion errors (thanks to
- Michael Tautschnig).
- Closes: #748305
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Sat, 24 May 2014 18:57:45 +0000
-
-genometools (1.5.2-3) unstable; urgency=low
-
- * Address building issues on s390x, powerpc and armhf
- * Don't use -m64 for arm64 (thanks to Logan Rosen)
- Closes: #748708
- * Build-depend on docbook-xsl to fix FTBFS while offline (thanks to
- Logan Rosen)
- Closes: #748709
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Mon, 19 May 2014 23:06:34 +0000
-
-genometools (1.5.2-2) unstable; urgency=low
-
- * Split manuals into separate documents to avoid strange LaTeX build issues.
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Thu, 15 May 2014 23:23:20 +0000
-
-genometools (1.5.2-1) unstable; urgency=low
-
- * New upstream release.
- * Remove symbols file because private symbols are exported (next upstream
- version will properly control exported symbols and a new symbols file
- will be created and maintained)
- * Remove manpages from debian directory as they are now autogenerated on
- build
- * Fix some missing symbols problems
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Thu, 15 May 2014 10:51:41 +0000
-
-genometools (1.5.1-3) unstable; urgency=low
-
- * debian/rules
- - Add basic tests to check whether cairo/pango linking works
- - Clean up indices created by tests to make repeated builds possible
- - Make sure bin/examples/sketch_parsed_with_* are built
- - Enable compiler optimization
- * debian/control
- - Move libgenometools0 package into libs section
- - Switch pango deps to new package
- - Add ruby builddep, required for the testsuite
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Wed, 06 Nov 2013 14:28:41 +0100
-
-genometools (1.5.1-2) unstable; urgency=low
-
- * debian/control
- - Add myself to Uploaders
- - cme fix dpkg-control
- - Follow liblua package name transition
- Closes: #728017
- - Remove depends from virtual package python-ctypes which is provided
- by python
- * provide symbols file
-
- -- Andreas Tille <tille at debian.org> Mon, 28 Oct 2013 08:17:04 +0100
-
-genometools (1.5.1-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Thu, 07 Mar 2013 14:08:05 +0100
-
-genometools (1.5.0-2) unstable; urgency=low
-
- * Patch manuals not to use includecomment/excludecomment
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Sat, 16 Feb 2013 16:58:11 +0100
-
-genometools (1.5.0-1) unstable; urgency=low
-
- * New upstream release
- * bugfixes and cleanups
- * development tool `gt sain' added to run an induced suffix array sorting
- algorithm
- * the -typecheck option in the `gt gff3` and `gt gff3validator` tools
- now also validates parent (part-of) relationships, see -help output for
- details
- * new option -encseq besides -seqfile(s) and -regionmapping to select a
- encseq index as a sequence source
- * GtBioseq backend switched to GtEncseq
- * GtSeqCol is now an interface, GtEncseqCol added
- * GtRankedList added
- * GtSNPAnnotatorStream and `gt snpper' tool added
- * node sorting code is now aware of MD5 hash presence
- * compatibility with old Pango versions inproved
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Tue, 05 Feb 2013 18:52:22 +0100
-
-genometools (1.4.2-4) unstable; urgency=low
-
- * Remove shlibs.local file
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Tue, 09 Oct 2012 12:24:17 +0200
-
-genometools (1.4.2-3) unstable; urgency=low
-
- * Build with pbuilder to obtain reasonable libc dependency (>= 2.13)
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Tue, 09 Oct 2012 10:04:34 +0200
-
-genometools (1.4.2-2) unstable; urgency=low
-
- * Fixed libpango-dev dependency
- * Updated manpages
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Mon, 08 Oct 2012 07:51:52 +0200
-
-genometools (1.4.2-1) unstable; urgency=low
-
- * New upstream release
- [ Sponsor Steffen Moeller ]
- * Update of policy to 3.9.4
- * Added DMUA flag
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Fri, 05 Oct 2012 15:47:56 +0200
-
-genometools (1.4.1-1) unstable; urgency=low
-
- * Initial release (Closes: #657923)
- * the GFF3 parser now handles children which are defined before their parents
- * many small improvements to the GFF3 parser
-
- -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Mon, 09 Jul 2012 14:10:23 +0100
Copied: trunk/packages/genometools/tags/1.5.8-1/debian/changelog (from rev 20974, trunk/packages/genometools/trunk/debian/changelog)
===================================================================
--- trunk/packages/genometools/tags/1.5.8-1/debian/changelog (rev 0)
+++ trunk/packages/genometools/tags/1.5.8-1/debian/changelog 2016-01-07 22:38:52 UTC (rev 20975)
@@ -0,0 +1,233 @@
+genometools (1.5.8-1) unstable; urgency=medium
+
+ * New upstream release.
+ * Ensure that /usr/share/genometools/* is complete.
+ * Fix spelling.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Thu, 07 Jan 2016 22:18:31 +0000
+
+genometools (1.5.7-7) unstable; urgency=medium
+
+ * build API documentation reproducibly
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Sat, 12 Dec 2015 19:13:40 +0000
+
+genometools (1.5.7-6) unstable; urgency=medium
+
+ * Reintroduce mips64el which was removed my mistake.
+ * Fix detection of x32 build
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Wed, 09 Dec 2015 22:20:47 +0000
+
+genometools (1.5.7-5) unstable; urgency=medium
+
+ * Try to load correct renamed .so file in Python bindings
+ * Refresh patches
+ * Use DEB_TARGET_ARCH to determine build archs
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Tue, 08 Dec 2015 00:42:49 +0000
+
+genometools (1.5.7-4) unstable; urgency=medium
+
+ * Fix builds on less popular platforms
+ - Check if faketime works
+ - Do no use -m32/-m64 on x32
+ * Improve reproducibility
+ - sort files to compile by name
+ * Add autopkgtests
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Fri, 04 Dec 2015 22:18:11 +0000
+
+genometools (1.5.7-3) unstable; urgency=low
+
+ * d/control: remove obsolete dependency on libncurses5
+ Closes: #804576
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Mon, 09 Nov 2015 19:15:29 +0000
+
+genometools (1.5.7-2) unstable; urgency=low
+
+ * disable parallel building
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Sat, 10 Oct 2015 12:04:37 +0000
+
+genometools (1.5.7-1) unstable; urgency=low
+
+ * New upstream release.
+ * d/rules: try ro improve reproducibility
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Sun, 13 Sep 2015 08:22:39 +0000
+
+genometools (1.5.6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Mon, 22 Jun 2015 19:26:35 +0000
+
+genometools (1.5.5-2) unstable; urgency=low
+
+ * Disable faketime on hurd-i386 to fix FTBFS on that arch.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Wed, 10 Jun 2015 10:03:22 +0000
+
+genometools (1.5.5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Sat, 06 Jun 2015 09:49:49 +0000
+
+genometools (1.5.4-2) experimental; urgency=low
+
+ * Work towards reproducibility.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Sun, 22 Mar 2015 08:09:07 +0000
+
+genometools (1.5.4-1) experimental; urgency=low
+
+ * New upstream release.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Fri, 12 Dec 2014 12:06:42 +0000
+
+genometools (1.5.3-2) unstable; urgency=low
+
+ * Reactivate missing patch.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Fri, 05 Sep 2014 14:23:31 +0100
+
+genometools (1.5.3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Wed, 16 Jul 2014 20:32:19 +0100
+
+genometools (1.5.2-4) unstable; urgency=low
+
+ * Incorporate patches addressing type conversion errors (thanks to
+ Michael Tautschnig).
+ Closes: #748305
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Sat, 24 May 2014 18:57:45 +0000
+
+genometools (1.5.2-3) unstable; urgency=low
+
+ * Address building issues on s390x, powerpc and armhf
+ * Don't use -m64 for arm64 (thanks to Logan Rosen)
+ Closes: #748708
+ * Build-depend on docbook-xsl to fix FTBFS while offline (thanks to
+ Logan Rosen)
+ Closes: #748709
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Mon, 19 May 2014 23:06:34 +0000
+
+genometools (1.5.2-2) unstable; urgency=low
+
+ * Split manuals into separate documents to avoid strange LaTeX build issues.
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Thu, 15 May 2014 23:23:20 +0000
+
+genometools (1.5.2-1) unstable; urgency=low
+
+ * New upstream release.
+ * Remove symbols file because private symbols are exported (next upstream
+ version will properly control exported symbols and a new symbols file
+ will be created and maintained)
+ * Remove manpages from debian directory as they are now autogenerated on
+ build
+ * Fix some missing symbols problems
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Thu, 15 May 2014 10:51:41 +0000
+
+genometools (1.5.1-3) unstable; urgency=low
+
+ * debian/rules
+ - Add basic tests to check whether cairo/pango linking works
+ - Clean up indices created by tests to make repeated builds possible
+ - Make sure bin/examples/sketch_parsed_with_* are built
+ - Enable compiler optimization
+ * debian/control
+ - Move libgenometools0 package into libs section
+ - Switch pango deps to new package
+ - Add ruby builddep, required for the testsuite
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Wed, 06 Nov 2013 14:28:41 +0100
+
+genometools (1.5.1-2) unstable; urgency=low
+
+ * debian/control
+ - Add myself to Uploaders
+ - cme fix dpkg-control
+ - Follow liblua package name transition
+ Closes: #728017
+ - Remove depends from virtual package python-ctypes which is provided
+ by python
+ * provide symbols file
+
+ -- Andreas Tille <tille at debian.org> Mon, 28 Oct 2013 08:17:04 +0100
+
+genometools (1.5.1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Thu, 07 Mar 2013 14:08:05 +0100
+
+genometools (1.5.0-2) unstable; urgency=low
+
+ * Patch manuals not to use includecomment/excludecomment
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Sat, 16 Feb 2013 16:58:11 +0100
+
+genometools (1.5.0-1) unstable; urgency=low
+
+ * New upstream release
+ * bugfixes and cleanups
+ * development tool `gt sain' added to run an induced suffix array sorting
+ algorithm
+ * the -typecheck option in the `gt gff3` and `gt gff3validator` tools
+ now also validates parent (part-of) relationships, see -help output for
+ details
+ * new option -encseq besides -seqfile(s) and -regionmapping to select a
+ encseq index as a sequence source
+ * GtBioseq backend switched to GtEncseq
+ * GtSeqCol is now an interface, GtEncseqCol added
+ * GtRankedList added
+ * GtSNPAnnotatorStream and `gt snpper' tool added
+ * node sorting code is now aware of MD5 hash presence
+ * compatibility with old Pango versions inproved
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Tue, 05 Feb 2013 18:52:22 +0100
+
+genometools (1.4.2-4) unstable; urgency=low
+
+ * Remove shlibs.local file
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Tue, 09 Oct 2012 12:24:17 +0200
+
+genometools (1.4.2-3) unstable; urgency=low
+
+ * Build with pbuilder to obtain reasonable libc dependency (>= 2.13)
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Tue, 09 Oct 2012 10:04:34 +0200
+
+genometools (1.4.2-2) unstable; urgency=low
+
+ * Fixed libpango-dev dependency
+ * Updated manpages
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Mon, 08 Oct 2012 07:51:52 +0200
+
+genometools (1.4.2-1) unstable; urgency=low
+
+ * New upstream release
+ [ Sponsor Steffen Moeller ]
+ * Update of policy to 3.9.4
+ * Added DMUA flag
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Fri, 05 Oct 2012 15:47:56 +0200
+
+genometools (1.4.1-1) unstable; urgency=low
+
+ * Initial release (Closes: #657923)
+ * the GFF3 parser now handles children which are defined before their parents
+ * many small improvements to the GFF3 parser
+
+ -- Sascha Steinbiss <steinbiss at zbh.uni-hamburg.de> Mon, 09 Jul 2012 14:10:23 +0100
Deleted: trunk/packages/genometools/tags/1.5.8-1/debian/genometools-common.install
===================================================================
--- trunk/packages/genometools/trunk/debian/genometools-common.install 2016-01-07 11:50:25 UTC (rev 20966)
+++ trunk/packages/genometools/tags/1.5.8-1/debian/genometools-common.install 2016-01-07 22:38:52 UTC (rev 20975)
@@ -1,16 +0,0 @@
-usr/bin/gtdata/doc usr/share/genometools/gtdata
-usr/bin/gtdata/obo_files usr/share/genometools/gtdata
-usr/bin/gtdata/sketch usr/share/genometools/gtdata
-usr/bin/gtdata/trans usr/share/genometools/gtdata
-usr/bin/gtdata/modules/fileutils.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtdoclib.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtdoclib usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtlua.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtlua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtmodulehelper.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/stringext.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/warning.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtlua.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/external/md5.lua usr/share/genometools/gtdata/modules/external
-usr/bin/gtdata/modules/external/re.lua usr/share/genometools/gtdata/modules/external
-
Copied: trunk/packages/genometools/tags/1.5.8-1/debian/genometools-common.install (from rev 20973, trunk/packages/genometools/trunk/debian/genometools-common.install)
===================================================================
--- trunk/packages/genometools/tags/1.5.8-1/debian/genometools-common.install (rev 0)
+++ trunk/packages/genometools/tags/1.5.8-1/debian/genometools-common.install 2016-01-07 22:38:52 UTC (rev 20975)
@@ -0,0 +1,18 @@
+usr/bin/gtdata/doc usr/share/genometools/gtdata
+usr/bin/gtdata/obo_files usr/share/genometools/gtdata
+usr/bin/gtdata/sketch usr/share/genometools/gtdata
+usr/bin/gtdata/spec usr/share/genometools/gtdata
+usr/bin/gtdata/trans usr/share/genometools/gtdata
+usr/bin/gtdata/xrf_abbr usr/share/genometools/gtdata
+usr/bin/gtdata/modules/fileutils.lua usr/share/genometools/gtdata/modules
+usr/bin/gtdata/modules/gtdoclib.lua usr/share/genometools/gtdata/modules
+usr/bin/gtdata/modules/gtdoclib usr/share/genometools/gtdata/modules
+usr/bin/gtdata/modules/gtlua.lua usr/share/genometools/gtdata/modules
+usr/bin/gtdata/modules/gtlua usr/share/genometools/gtdata/modules
+usr/bin/gtdata/modules/gtmodulehelper.lua usr/share/genometools/gtdata/modules
+usr/bin/gtdata/modules/stringext.lua usr/share/genometools/gtdata/modules
+usr/bin/gtdata/modules/warning.lua usr/share/genometools/gtdata/modules
+usr/bin/gtdata/modules/gtlua.lua usr/share/genometools/gtdata/modules
+usr/bin/gtdata/modules/external/md5.lua usr/share/genometools/gtdata/modules/external
+usr/bin/gtdata/modules/external/re.lua usr/share/genometools/gtdata/modules/external
+
Deleted: trunk/packages/genometools/tags/1.5.8-1/debian/patches/series
===================================================================
--- trunk/packages/genometools/trunk/debian/patches/series 2016-01-07 11:50:25 UTC (rev 20966)
+++ trunk/packages/genometools/tags/1.5.8-1/debian/patches/series 2016-01-07 22:38:52 UTC (rev 20975)
@@ -1,8 +0,0 @@
-remove_png_timestamps
-adding_soname
-libbam-fix
-remove-gitignores
-fix-exports
-split-manuals
-use-mx32
-sort-inputs
Copied: trunk/packages/genometools/tags/1.5.8-1/debian/patches/series (from rev 20974, trunk/packages/genometools/trunk/debian/patches/series)
===================================================================
--- trunk/packages/genometools/tags/1.5.8-1/debian/patches/series (rev 0)
+++ trunk/packages/genometools/tags/1.5.8-1/debian/patches/series 2016-01-07 22:38:52 UTC (rev 20975)
@@ -0,0 +1,8 @@
+spelling
+remove_png_timestamps
+adding_soname
+libbam-fix
+remove-gitignores
+fix-exports
+split-manuals
+use-mx32
Copied: trunk/packages/genometools/tags/1.5.8-1/debian/patches/spelling (from rev 20974, trunk/packages/genometools/trunk/debian/patches/spelling)
===================================================================
--- trunk/packages/genometools/tags/1.5.8-1/debian/patches/spelling (rev 0)
+++ trunk/packages/genometools/tags/1.5.8-1/debian/patches/spelling 2016-01-07 22:38:52 UTC (rev 20975)
@@ -0,0 +1,186 @@
+Description: fix spelling of occurred
+Author: Sascha Steinbiss <sascha at steinbiss.name>
+Forwarded: https://github.com/genometools/genometools/pull/727
+Last-Update: 2016-01-07
+--- a/gtdata/doc/fingerprint.lua
++++ b/gtdata/doc/fingerprint.lua
+@@ -36,5 +36,5 @@
+
+ - 0 everything went fine ('-check': the comparison was successful;
+ '-duplicates': no duplicates found)
+-- 1 an error occured ('-check': the comparison was not successful;
++- 1 an error occurred ('-check': the comparison was not successful;
+ '-duplicates': duplicates found)]])
+--- a/src/core/error_api.h
++++ b/src/core/error_api.h
+@@ -26,7 +26,7 @@
+ This class is used for the handling of ___user errors___ in __GenomeTools__.
+ Thereby, the actual <GtError> object is used to store the __error message__
+ while it is signaled by the return value of the called function, if an error
+- occured.
++ occurred.
+
+ By convention in __GenomeTools__, the <GtError> object is always passed into
+ a function as the last parameter and -1 (or <NULL> for constructors) is used
+--- a/src/core/hashtable.h
++++ b/src/core/hashtable.h
+@@ -81,14 +81,14 @@
+ /**
+ * @brief iterate over the hashtable in key order given by compare
+ * function <cmp>
+- * @return 0 => no error, -1 => error occured
++ * @return 0 => no error, -1 => error occurred
+ */
+ int gt_hashtable_foreach_ordered(GtHashtable *ht, Elemvisitfunc iter,
+ void *data, GtCompare cmp,
+ GtError *err);
+ /**
+ * @brief iterate over the hashtable in implementation-defined order
+- * @return 0 => no error, -1 => error occured
++ * @return 0 => no error, -1 => error occurred
+ */
+ int gt_hashtable_foreach(GtHashtable *ht, Elemvisitfunc iter,
+ void *data, GtError *err);
+--- a/src/core/option_api.h
++++ b/src/core/option_api.h
+@@ -34,14 +34,14 @@
+
+ enum GtOPrval {
+ GT_OPTION_PARSER_OK, /* Everything went fine. */
+- GT_OPTION_PARSER_ERROR, /* An error occured during option parsing. */
++ GT_OPTION_PARSER_ERROR, /* An error occurred during option parsing. */
+ GT_OPTION_PARSER_REQUESTS_EXIT /* The option parser requests an exit, because
+ option -help, -help+, -helpdev, or -version
+ was used. */
+ };
+
+ /* Possible option parser return values. <GT_OPTION_PARSER_OK> denotes that
+- everything went fine, <GT_OPTION_PARSER_ERROR> that an error occured during
++ everything went fine, <GT_OPTION_PARSER_ERROR> that an error occurred during
+ option parsing, and <GT_OPTION_PARSER_REQUESTS_EXIT> that the option parser
+ requests an exit, because option <-help>, <-help+>, <-helpdev> or <-version>
+ was used. */
+--- a/src/core/seq_iterator_api.h
++++ b/src/core/seq_iterator_api.h
+@@ -40,7 +40,7 @@
+ /* Get next <sequence> (of length <len>) and <description> from <seqit>.
+ Note that <seqit> retains ownership of the <sequence> and <description>.
+ Returns 1 if another sequence could be parsed, 0 if all given sequence
+- files are exhausted, And -1 if an error occured (<err> is set
++ files are exhausted, And -1 if an error occurred (<err> is set
+ accordingly). */
+ int gt_seq_iterator_next(GtSeqIterator *seqit,
+ const GtUchar **sequence,
+--- a/src/extended/node_stream_api.h
++++ b/src/extended/node_stream_api.h
+@@ -35,7 +35,7 @@
+ If no error occurs, 0 is returned and <genome_node> contains either the next
+ <GtGenomeNode> or <NULL>, if the <node_stream> is exhausted.
+ If an error occurs, -1 is returned and <err> is set accordingly (the status
+- of <genome_node> is undefined, but no ownership transfer occured). */
++ of <genome_node> is undefined, but no ownership transfer occurred). */
+ int gt_node_stream_next(GtNodeStream *node_stream,
+ GtGenomeNode **genome_node,
+ GtError *err);
+--- a/src/external/lua-5.1.5/src/lbaselib.c
++++ b/src/external/lua-5.1.5/src/lbaselib.c
+@@ -501,7 +501,7 @@
+ else
+ return CO_SUS; /* initial state */
+ }
+- default: /* some error occured */
++ default: /* some error occurred */
+ return CO_DEAD;
+ }
+ }
+--- a/src/gth/intermediate.c
++++ b/src/gth/intermediate.c
+@@ -515,7 +515,7 @@
+ if (XML_Parse(parser, gt_str_get(line), gt_str_length(line), false) ==
+ XML_STATUS_ERROR) {
+ error = XML_GetErrorCode(parser);
+- gt_error_set(err, "an error occured parsing line "GT_WU
++ gt_error_set(err, "an error occurred parsing line "GT_WU
+ " of file \"%s\": %s",
+ parseinfo.linenumber, outputfilename,
+ XML_ErrorString(error));
+@@ -530,7 +530,7 @@
+ /* finish parsing */
+ if (XML_Parse(parser, NULL, 0, true) == XML_STATUS_ERROR) {
+ error = XML_GetErrorCode(parser);
+- gt_error_set(err, "an error occured while finishing the parsing of file "
++ gt_error_set(err, "an error occurred while finishing the parsing of file "
+ "\"%s\": %s", outputfilename, XML_ErrorString(error));
+ had_err = -1;
+ }
+--- a/src/match/eis-encidxseq-construct.h
++++ b/src/match/eis-encidxseq-construct.h
+@@ -118,7 +118,7 @@
+ * suffix-array data structure to read construction from and progress
+ * information
+ * @param alphabet encoding to use for the built sequence, "ownership"
+- * of alphabet will pass to the returned object if no error occured.
++ * of alphabet will pass to the returned object if no error occurred.
+ * @param totalLen length of indexed sequence (including terminator
+ * and separators)
+ * @param projectName base name of corresponding suffixerator project
+--- a/src/match/eis-encidxseq.h
++++ b/src/match/eis-encidxseq.h
+@@ -50,7 +50,7 @@
+ * pass information that is kept across individual calls
+ * @param err genometools error object reference
+ * @return number of bits actually written, or (BitOffset)-1 if an
+- * error occured
++ * error occurred
+ */
+ typedef BitOffset (*bitInsertFunc)(BitString cwDest, BitOffset cwOffset,
+ BitString varDest, BitOffset varOffset,
+@@ -436,7 +436,7 @@
+ * @param pos position for which to print context
+ * @param fp print diagnostics to this file pointer
+ * @param hint use this structure for hinting
+- * @return 0 if an I/O error occured wrt fp
++ * @return 0 if an I/O error occurred wrt fp
+ */
+ static inline int
+ EISPrintDiagsForPos(const EISeq *seqIdx, GtUword pos, FILE *fp,
+--- a/www/genometools.org/htdocs/libgenometools.html
++++ b/www/genometools.org/htdocs/libgenometools.html
+@@ -3197,7 +3197,7 @@
+ This class is used for the handling of <strong>user errors</strong> in <em>GenomeTools</em>.
+ Thereby, the actual <code>GtError</code> object is used to store the <em>error message</em>
+ while it is signaled by the return value of the called function, if an error
+- occured.</p><p> By convention in <em>GenomeTools</em>, the <code>GtError</code> object is always passed into
++ occurred.</p><p> By convention in <em>GenomeTools</em>, the <code>GtError</code> object is always passed into
+ a function as the last parameter and -1 (or <code>NULL</code> for constructors) is used
+ as return value to indicate that an error occurred.
+ Success is usually indicated by 0 as return value or via a non-<code>NULL</code> object
+@@ -5879,7 +5879,7 @@
+ If no error occurs, 0 is returned and <code>genome_node</code> contains either the next
+ <code>GtGenomeNode</code> or <code>NULL</code>, if the <code>node_stream</code> is exhausted.
+ If an error occurs, -1 is returned and <code>err</code> is set accordingly (the status
+- of <code>genome_node</code> is undefined, but no ownership transfer occured).
++ of <code>genome_node</code> is undefined, but no ownership transfer occurred).
+ </p>
+ <hr>
+ <a name="gt_node_stream_pull"></a>
+@@ -7430,7 +7430,7 @@
+ Get next <code>sequence</code> (of length <code>len</code>) and <code>description</code> from <code>seqit</code>.
+ Note that <code>seqit</code> retains ownership of the <code>sequence</code> and <code>description</code>.
+ Returns 1 if another sequence could be parsed, 0 if all given sequence
+- files are exhausted, And -1 if an error occured (<code>err</code> is set
++ files are exhausted, And -1 if an error occurred (<code>err</code> is set
+ accordingly).
+ </p>
+ <hr>
+--- a/www/genometools.org/htdocs/tools/gt_fingerprint.html
++++ b/www/genometools.org/htdocs/tools/gt_fingerprint.html
+@@ -176,7 +176,7 @@
+ </li>
+ <li>
+ <p>
+-1 an error occured (<em>-check</em>: the comparison was not successful;
++1 an error occurred (<em>-check</em>: the comparison was not successful;
+ <em>-duplicates</em>: duplicates found)
+ </p>
+ </li>
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