[med-svn] [bart] annotated tag v0.3.00 created (now 3e51eb6)

[Martin Uecker]

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uecker-guest pushed a change to annotated tag v0.3.00
in repository bart.

        at  3e51eb6   (tag)
   tagging  856d987ae6335b92bca4a599c52d67735273b8d0 (commit)
  replaces  v0.2.09d
 tagged by  Martin Uecker
        on  Fri Jan 8 12:27:49 2016 +0100

- Log -----------------------------------------------------------------
version 0.3.00

Changes:
	- all tools are integrated into the bart command
		(e.g. call "bart pics ...")
	- new tools: mip, lrmatrix, estdims, filter, estvar
		- mip: maximum-intensity projection
		- estdims: estimate dimension ffrom non-Cartesian trajectories
		- lrmatrix: (multi-scale) low-rank decomposition and matrix completion
		- filter: median filter
		- estvar: estimate noise variance from calibration matrix
	- removed deprecated tools: sense, relnorm
	- pics: multi-scale low rank regularization
	- pics: new options (scale factor, warm-start)
	- threshold: added divergence-free wavelet, locally low-rank, and wavelet thresholding
	- phantom: 3d image-domain + k-space
	- homodyne: various improvements and new options
	- new command-line completion script for bash shell
	- remove dependency on GSL
	- library: improved processing of command-line options
	- library: least-absolute deviation using reweighting (lad.c/h)
	- library: relax cuda fft constraints
 	- library: multind/vecops functions for comparisons
	- library: add {less,greater} than or equal to prox functions
	- many other bug fixes and enhancements
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Frank Ong (9):
      add estdims to estimate noncartesian dimension
      move estdims from TBASE to TRECO
      removed -lnoncart from bbox
      Merge pull request #16 from frankong/master
      fix estdims modules
      fix estdims modules
      Merge pull request #17 from frankong/master
      fixed bart.m memory bug. bug: when bart.m errors, the tmp memories are not deleted
      Merge pull request #22 from mrirecon/specfun

Gregory R. Lee (2):
      fix bug in nufft argument handling
      allow lowercase 'd' as well

Jon Tamir (1):
      Merge pull request #18 from frankong/master

Jonathan Tamir (9):
      homodyne: input in image domain
      homodyne: treat all dimensions as equals
      use ramp filter (but leave in staircase step filter)
      homodyne: add option to change the slope/size of the ramp filter, between 0 and 1
      homodyne: call num_init for parallelization
      update help string
      add some help strings
      add MIP/mIP tool
      mip:copyright

Martin Uecker (55):
      ecalib: add -S to help
      add target to (re-)produce release tarballs
      use -lz only for static linking
      add initial bart completion script
      prefer commands in TOOLBOX_PATH if set
      improve bart script
      add missing -g option
      Makefile fix
      typo
      new function for processing of cmline options
      use cmdline in fft
      fix warnings
      update option processing
      use 'cmdline' function in some tools
      convert more tools
      add vec3/select
      cmdline: convert rest of the tools
      bart matlab script: check for empty args + formatting
      move bart_completion.sh
      add least-absolute deviation
      add rdiag operator
      remove some #ifdefs
      Merge branch 'opts'
      update to grasp script (courtesy of tobias block)
      Makefile improvements
      use libc's j1
      add our own modified bessel function
      use it
      remove GSL
      update README
      save command line options
      always save cmdline
      quote function
      simplify
      remove deprecated commands
      remove imshow3.m (should be moved to matlab examples)
      README update
      references
      move update-* scripts to rules/
      name in manpage
      build fix
      use xmalloc
      copyright
      system-wide addon commands
      makefile
      build fix cuda
      makefile fix
      type-save option macros, and formatting
      fix buffer overrun
      remove sizeinit
      deprecate upper-case vector options
      Merge branch 'grlee77-nufft_bugfix'
      add 3d phantom
      phantom: permute dims
      bump version

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