[med-svn] [daligner] branch master updated (fffc6e1 -> 47ddfce)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif-guest pushed a change to branch master
in repository daligner.

      from  fffc6e1   Paste exact license from README.
       new  c71ad71   Imported Upstream version 1.0+20151214
       new  a2e9e56   Merge tag 'upstream/1.0+20151214'
       new  2158365   Correct homepage
       new  5149ad7   Prepare new revision
       new  e52075e   Add manpages for new executables
       new  ad7f86e   Stylistic consistency
       new  e2ca303   Refresh/adjust patches
       new  40e49e9   Suggest dazzdb
       new  47ddfce   daligner (1.0+20151214-1) unstable; urgency=medium

The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DB.c                                               |  198 +-
 DB.h                                               |   50 +-
 HPCdaligner.c                                      |   37 -
 HPCmapper.c                                        |   60 +-
 LAcat.c                                            |   41 +-
 LAcheck.c                                          |   37 -
 LAdump.c                                           |  478 +++++
 LAindex.c                                          |  201 ++
 LAmerge.c                                          |  108 +-
 LAshow.c                                           |   66 +-
 LAsort.c                                           |   84 +-
 LAsplit.c                                          |   37 -
 LAupgrade.Dec.31.2014.c                            |   44 +-
 LICENSE                                            |   34 +
 Makefile                                           |   10 +-
 QV.c                                               |   37 -
 QV.h                                               |   37 -
 README                                             |  110 +-
 align.c                                            | 2075 ++++++++++++++++----
 align.h                                            |   72 +-
 daligner.c                                         |  268 +--
 debian/changelog                                   |   10 +
 debian/control                                     |   14 +-
 debian/{daligner-doc => man}/HPCdaligner.1.md      |    0
 debian/{daligner-doc => man}/HPCmapper.1.md        |    0
 debian/{daligner-doc => man}/LAcat.1.md            |    0
 debian/{daligner-doc => man}/LAcheck.1.md          |    0
 debian/man/LAdump.1.md                             |   52 +
 debian/man/LAindex.1.md                            |   27 +
 debian/{daligner-doc => man}/LAmerge.1.md          |    0
 debian/{daligner-doc => man}/LAshow.1.md           |    0
 debian/{daligner-doc => man}/LAsort.1.md           |    0
 debian/{daligner-doc => man}/LAsplit.1.md          |    0
 debian/{daligner-doc => man}/Makefile              |    0
 debian/{daligner-doc => man}/daligner.1.md         |    0
 debian/manpages                                    |    2 +-
 debian/patches/cflags                              |    8 -
 debian/patches/cflags.patch                        |   12 +
 .../{destdir-install => destdir-install.patch}     |    6 +-
 debian/patches/{lddflags => lddflags.patch}        |   16 +-
 debian/patches/series                              |    6 +-
 debian/rules                                       |    9 +-
 filter.c                                           |  703 +++++--
 filter.h                                           |   42 +-
 44 files changed, 3652 insertions(+), 1339 deletions(-)
 create mode 100644 LAdump.c
 create mode 100644 LAindex.c
 create mode 100644 LICENSE
 rename debian/{daligner-doc => man}/HPCdaligner.1.md (100%)
 rename debian/{daligner-doc => man}/HPCmapper.1.md (100%)
 rename debian/{daligner-doc => man}/LAcat.1.md (100%)
 rename debian/{daligner-doc => man}/LAcheck.1.md (100%)
 create mode 100644 debian/man/LAdump.1.md
 create mode 100644 debian/man/LAindex.1.md
 rename debian/{daligner-doc => man}/LAmerge.1.md (100%)
 rename debian/{daligner-doc => man}/LAshow.1.md (100%)
 rename debian/{daligner-doc => man}/LAsort.1.md (100%)
 rename debian/{daligner-doc => man}/LAsplit.1.md (100%)
 rename debian/{daligner-doc => man}/Makefile (100%)
 rename debian/{daligner-doc => man}/daligner.1.md (100%)
 delete mode 100644 debian/patches/cflags
 create mode 100644 debian/patches/cflags.patch
 rename debian/patches/{destdir-install => destdir-install.patch} (56%)
 rename debian/patches/{lddflags => lddflags.patch} (75%)

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