[med-svn] [daligner] 02/09: Merge tag 'upstream/1.0+20151214'

[Afif Elghraoui]

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afif-guest pushed a commit to branch master
in repository daligner.

commit a2e9e5620f7b48b1ed7e9d7fca3a3ff28564041d
Merge: fffc6e1 c71ad71
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Fri Jan 8 21:11:34 2016 -0800

    Merge tag 'upstream/1.0+20151214'
    
    Upstream version 1.0+20151214

 DB.c                    |  198 +++--
 DB.h                    |   50 +-
 HPCdaligner.c           |   37 -
 HPCmapper.c             |   60 +-
 LAcat.c                 |   41 +-
 LAcheck.c               |   37 -
 LAdump.c                |  478 +++++++++++
 LAindex.c               |  201 +++++
 LAmerge.c               |  108 ++-
 LAshow.c                |   66 +-
 LAsort.c                |   84 +-
 LAsplit.c               |   37 -
 LAupgrade.Dec.31.2014.c |   44 +-
 LICENSE                 |   34 +
 Makefile                |   10 +-
 QV.c                    |   37 -
 QV.h                    |   37 -
 README                  |  110 ++-
 align.c                 | 2075 +++++++++++++++++++++++++++++++++++++++--------
 align.h                 |   72 +-
 daligner.c              |  268 +++---
 filter.c                |  703 ++++++++++++----
 filter.h                |   42 +-
 23 files changed, 3515 insertions(+), 1314 deletions(-)

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