[med-svn] r21171 - in trunk/packages/R/r-cran-diagnosismed/trunk/debian: . patches

Wed Jan 13 20:30:23 UTC 2016

Author: tille
Date: 2016-01-13 20:30:23 +0000 (Wed, 13 Jan 2016)
New Revision: 21171

Added:
   trunk/packages/R/r-cran-diagnosismed/trunk/debian/README.Debian
   trunk/packages/R/r-cran-diagnosismed/trunk/debian/patches/spelling.patch
Modified:
   trunk/packages/R/r-cran-diagnosismed/trunk/debian/changelog
   trunk/packages/R/r-cran-diagnosismed/trunk/debian/control
   trunk/packages/R/r-cran-diagnosismed/trunk/debian/copyright
   trunk/packages/R/r-cran-diagnosismed/trunk/debian/patches/series
Log:
Commit changes for 0.2.3-4


Added: trunk/packages/R/r-cran-diagnosismed/trunk/debian/README.Debian
===================================================================

--- trunk/packages/R/r-cran-diagnosismed/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/R/r-cran-diagnosismed/trunk/debian/README.Debian	2016-01-13 20:30:23 UTC (rev 21171)
@@ -0,0 +1,3 @@
+DiagnosisMed was removed from CRAN (see
+   https://cran.r-project.org/web/packages/DiagnosisMed/ )
+

Modified: trunk/packages/R/r-cran-diagnosismed/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-diagnosismed/trunk/debian/changelog	2016-01-13 20:29:21 UTC (rev 21170)
+++ trunk/packages/R/r-cran-diagnosismed/trunk/debian/changelog	2016-01-13 20:30:23 UTC (rev 21171)
@@ -1,8 +1,9 @@
-r-cran-diagnosismed (0.2.3-4) UNRELEASED; urgency=medium
+r-cran-diagnosismed (0.2.3-4) unstable; urgency=medium
 
   * cme fix dpkg-control
+  * Fix spelling
 
- -- Andreas Tille <tille at debian.org>  Sat, 18 Jan 2014 14:32:55 +0100
+ -- Andreas Tille <tille at debian.org>  Wed, 13 Jan 2016 14:23:33 +0100
 
 r-cran-diagnosismed (0.2.3-3) unstable; urgency=low
 

Modified: trunk/packages/R/r-cran-diagnosismed/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-diagnosismed/trunk/debian/control	2016-01-13 20:29:21 UTC (rev 21170)
+++ trunk/packages/R/r-cran-diagnosismed/trunk/debian/control	2016-01-13 20:30:23 UTC (rev 21171)
@@ -10,7 +10,7 @@
                      r-cran-epitools,
                      r-cran-teachingdemos,
                      r-cran-amore
-Standards-Version: 3.9.5
+Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-diagnosismed/trunk
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-diagnosismed/trunk/
 Homepage: http://cran.r-project.org/web/packages/DiagnosisMed

Modified: trunk/packages/R/r-cran-diagnosismed/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-diagnosismed/trunk/debian/copyright	2016-01-13 20:29:21 UTC (rev 21170)
+++ trunk/packages/R/r-cran-diagnosismed/trunk/debian/copyright	2016-01-13 20:30:23 UTC (rev 21171)
@@ -8,7 +8,7 @@
 License: GPL-2+
 
 Files: debian/*
-Copyright: 2008 Andreas Tille   <tille at debian.org>
+Copyright: 2008-2016 Andreas Tille   <tille at debian.org>
            2009 Charles Plessy <plessy at debian.org>
 License: GPL-2+
 
@@ -26,6 +26,6 @@
  You should have received a copy of the GNU General Public License
  along with this program.  If not, see <http://www.gnu.org/licenses/>.
  .
- On Debian systems, the complete text of the GNU Public
+ On Debian systems, the complete text of the GNU General Public
  License version 2 can be found in `/usr/share/common-licenses/GPL-2'.
 

Modified: trunk/packages/R/r-cran-diagnosismed/trunk/debian/patches/series
===================================================================
--- trunk/packages/R/r-cran-diagnosismed/trunk/debian/patches/series	2016-01-13 20:29:21 UTC (rev 21170)
+++ trunk/packages/R/r-cran-diagnosismed/trunk/debian/patches/series	2016-01-13 20:30:23 UTC (rev 21171)
@@ -1 +1,2 @@
+spelling.patch
 namespace.patch

Added: trunk/packages/R/r-cran-diagnosismed/trunk/debian/patches/spelling.patch
===================================================================
--- trunk/packages/R/r-cran-diagnosismed/trunk/debian/patches/spelling.patch	                        (rev 0)
+++ trunk/packages/R/r-cran-diagnosismed/trunk/debian/patches/spelling.patch	2016-01-13 20:30:23 UTC (rev 21171)
@@ -0,0 +1,39 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 13 Jan 2016 14:18:41 +0100
+Bug-Upstream: https://r-forge.r-project.org/tracker/index.php?func=detail&aid=1478&group_id=258&atid=1044
+Description: Fix spelling
+
+--- a/R/print.TGROC.r
++++ b/R/print.TGROC.r
+@@ -8,16 +8,16 @@ print.TGROC<-function(x,...){
+   cat("Test summary.-------------------------------------------------------------------\n")  
+   print(x$test.summary)
+   cat("\n\n")
+-  cat("Non-paramentric inconclusive cut-off limits with",x$inc,"inconclusive tolerance.---\n")  
++  cat("Non-parametric inconclusive cut-off limits with",x$inc,"inconclusive tolerance.---\n")  
+   print(x$non.parametric.inconclusive)
+   cat("\n\n")
+-  cat("Non-paramentric best cut-off estimations with",x$conf.limit,"confidence limits.------------\n")  
++  cat("Non-parametric best cut-off estimations with",x$conf.limit,"confidence limits.------------\n")  
+   print(x$np.test.best.cutoff)
+   cat("\n\n")
+-  cat("Paramentric inconclusive cut-off limits with",x$inc,"inconclusive tolerance.--------\n")  
++  cat("Parametric inconclusive cut-off limits with",x$inc,"inconclusive tolerance.--------\n")  
+   print(x$parametric.inconclusive)
+   cat("\n\n")
+-  cat("Paramentric best cut-off estimations with",x$conf.limit,"confidence limits.----------------\n")  
++  cat("Parametric best cut-off estimations with",x$conf.limit,"confidence limits.----------------\n")  
+   print(x$par.test.best.cutoff)
+   cat("\n\n")
+ }  
+--- a/man/TGROC.Rd
++++ b/man/TGROC.Rd
+@@ -65,7 +65,7 @@ TGROC(gold,
+   \item{n.shows}{Number of times to report (if report is TRUE).See \link[AMORE]{train}.}
+   \item{Plot}{Possible values are: "None", "Both", "Parametric" and "Non-parametric". TGROC may plot parametric, non-parametric, both or no plot at all depending of this option. Default is to plot both curves.}
+   \item{Plot.inc.range}{Plot inconclusive range. If TRUE, the lines representing the limits of the inconclusive range will be displayed. Default is TRUE. Parametric inconclusive range will be displayed if Plot = "Parametric" or Plot = "Both" and non-parametric inconclusive range otherwise. If Plot is FALSE then Plot.inc.range is not considered.}
+-  \item{Plot.Cl}{Plot confidence limits. If TRUE, confidence bands for sensitivity and specificity curves will be displayed. If Plot = "Parametric" or Plot = "Both" than parametric bands are displayed and non-paramentric otherwise. Default is FLASE. If Plot is FALSE than Plot.Cl is not considered.}
++  \item{Plot.Cl}{Plot confidence limits. If TRUE, confidence bands for sensitivity and specificity curves will be displayed. If Plot = "Parametric" or Plot = "Both" than parametric bands are displayed and non-parametric otherwise. Default is FALSE. If Plot is FALSE than Plot.Cl is not considered.}
+   \item{Plot.cutoff}{A line representing the estimated best cut-off (threshold) will be displayed. If Plot is FALSE then Plot.cutoff is not considered. If Plot = "Parametric" or Plot = "Both" than the parametric values are represented and non-parametric otherwise. Default is "None". Possible values are:
+         "Se=Sp" - the cut-off which Sensitivity is equal to Specificity;
+ 


